View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8929_low_30 (Length: 316)
Name: NF8929_low_30
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8929_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 1491671 - 1491380
Alignment:
| Q |
17 |
atcagcactagcaaaaataagtgcagacaaaaatagtaaagtgagagacctcaataatcagaatcaaccaacaacaacaagtgatgtttttgtttggcac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1491671 |
atcagcactagcaaaaataagtgcagacaaaaatagtaaagtgagagacctcaataatcagaatcaaccaacaacaacaagtgatgtttttgtttggcac |
1491572 |
T |
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| Q |
117 |
aaagtaataggacaaatttcaattcagatcatagtttttgttttgaaacactagattttgagcagcccattaaatgaacaaggttgcaccaatttaaatc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1491571 |
aaagtaataggacaaatttcaattcagatcatagtttttgttttgaaacactagattttgagcagcccattaaatgaacaatgttgcaccaatttaaatc |
1491472 |
T |
|
| Q |
217 |
ggaagcatttttaaacatcactacagtgaagcaatgaataacgaagataatagctgaaatgagagaccccaataatcacaagcagaataatc |
308 |
Q |
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| T |
1491471 |
ggaagcatttttaaacatcactacagtgaagcaatgaataacgaagataatagctgaaatgagagaccccaataatcacaagcagaataatc |
1491380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 95 - 198
Target Start/End: Complemental strand, 1512768 - 1512667
Alignment:
| Q |
95 |
aagtgatgtttttgtttggcacaaagtaataggacaaatttcaattcagatcatagtttttgttttgaaacactagattttgagcagcccattaaatgaa |
194 |
Q |
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|||||||| ||| | ||||||||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||| ||| |
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| T |
1512768 |
aagtgatgctttcgcttggcacaa--taataggaaaaatttcaattcagatcatagtttttgttataaaacactagattttgagcagcccagaaaaagaa |
1512671 |
T |
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| Q |
195 |
caag |
198 |
Q |
| |
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|||| |
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| T |
1512670 |
caag |
1512667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 12122684 - 12122608
Alignment:
| Q |
18 |
tcagcactagcaa-aaataagtgcagacaaaaatagtaaagtgagagacctcaataatcagaatcaaccaacaacaa |
93 |
Q |
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|||||||||||| |||||||||||||||| ||||||||| ||||| || |||||||||||||||||||||||||| |
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| T |
12122684 |
tcagcactagcacgaaataagtgcagacaataatagtaaaatgagaaacaccaataatcagaatcaaccaacaacaa |
12122608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 656035 - 656136
Alignment:
| Q |
42 |
gacaaaaatagtaaagtgagagacctcaataatcagaatcaaccaacaacaacaagtgatgtttttgtttggcacaaagtaataggacaaatttcaattc |
141 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||| || ||||||||||| |||||| | || || |||||||| |
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| T |
656035 |
gacaaaaatagtaaagtgagagattccaatattcagaatcaaccagagaaaacaagtgatacttatgtttggcacacagtaattgcacgaaattcaattc |
656134 |
T |
|
| Q |
142 |
ag |
143 |
Q |
| |
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|| |
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|
| T |
656135 |
ag |
656136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 297
Target Start/End: Complemental strand, 1496875 - 1496768
Alignment:
| Q |
190 |
atgaacaaggttgcaccaatttaaatcggaagcatttttaaacatcactacagtgaagcaatgaataacgaagataatagctgaaatgagagaccccaat |
289 |
Q |
| |
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||||||||| ||||||||| ||||||| |||||| |||||||||| |||| | ||||||| ||| || ||||||||| ||| |||||| |||||| |
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| T |
1496875 |
atgaacaagattgcaccaacttaaatcaaaagcatctttaaacatccctactaccatgcaatgagcaacaaaaataatagctaaaacgagagaacccaat |
1496776 |
T |
|
| Q |
290 |
aatcacaa |
297 |
Q |
| |
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|||||||| |
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|
| T |
1496775 |
aatcacaa |
1496768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 557127 - 557224
Alignment:
| Q |
46 |
aaaatagtaaagtgagagacctcaataatcagaatcaaccaacaacaacaagtgatgtttttgtttggcacaaagtaataggacaaatttcaattcag |
143 |
Q |
| |
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|||| |||||| |||||||| |||||||||||||||||| |||||||| ||||| ||| |||||| ||| | ||||| |||||| ||||||||| |
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| T |
557127 |
aaaaaagtaaaacgagagaccaaaataatcagaatcaaccagcaacaacaggtgattctttcgtttggaacacaataatatcacaaatatcaattcag |
557224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 1509410 - 1509316
Alignment:
| Q |
196 |
aaggttgcaccaatttaaatcggaagcatttttaaacatcactacagtgaagcaatgaataacgaagataatagctgaaatgagagaccccaataa |
291 |
Q |
| |
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|||||||||| || ||||||| ||| |||||| || || |||||||| ||| |||||||||||| || || ||| ||||||||||||||||||| |
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| T |
1509410 |
aaggttgcacgaacttaaatcagaaacatttt-aagcaccactacaggcaagaaatgaataacgataatgatggctaaaatgagagaccccaataa |
1509316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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