View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8929_low_33 (Length: 292)
Name: NF8929_low_33
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8929_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 39229559 - 39229837
Alignment:
| Q |
1 |
atgtgattatttttagtctgtgcttgagaaggagcgcaaaggagattatctcggaaaaactgttcaggtgataaatcgtgcgcgtgtttgtgctatttat |
100 |
Q |
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| T |
39229559 |
atgtgattatttttagtctgtgcttgagaaggagcgcaaaggagattatctcggaaaaactgttcaggtgataaatcgtgcacgtgtttgtgctatttat |
39229658 |
T |
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| Q |
101 |
acttgttaattgattgctgaataatggatattttgtgtggataatgaagataagattactgagttgttgaga-nnnnnnngatgaaataggtggttccgc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
39229659 |
acttgttaattgattgctgaataatggatattttgtgtggataatgaagataagattactgagctgttgagattttttttgatgaaataggtggttccgc |
39229758 |
T |
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| Q |
200 |
atatcaccgatgcaatcagaaactggattgaatcggttgctgtgatcccggttgatggaaatgaagaccctgctgatgt |
278 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39229759 |
atatcactgatgcaatcagaaactggattgaatcggttgctgtgatcccggttgatggaaatgaagaccctgctgatgt |
39229837 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 26519449 - 26519507
Alignment:
| Q |
11 |
ttttagtctgtgcttgagaaggagcgcaaaggagattatctcggaaaaactgttcaggt |
69 |
Q |
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||||||||||| ||||||||||| | | |||||||||||| ||||| ||||||||||| |
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| T |
26519449 |
ttttagtctgttattgagaaggagagaagaggagattatcttggaaagactgttcaggt |
26519507 |
T |
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