View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8929_low_34 (Length: 292)
Name: NF8929_low_34
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8929_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 36951453 - 36951189
Alignment:
| Q |
18 |
ccttccatctattttcccttttttccaatttccaatatagatacttccatcattccaagtaaattttccgctgccttcgcgaattccttctttccataaa |
117 |
Q |
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| T |
36951453 |
ccttccatctattttcccttttttccaatttccaatatagatacttccatcattccaagtaaattttccgctgccttcgcgaattccttctttccataaa |
36951354 |
T |
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| Q |
118 |
ccttcgtaaatatctgaattggaatacacttttcgtccaatcccgtgatgagcattcatcctccatccacctgtgtaaacacagccgttcgattttgtga |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36951353 |
ccttcgtaaatatctgaattggaatacgcttttcgtccaatcccgtgatgagcattcatcctccatccacctgtgtaaacacagccgttcgattttgtga |
36951254 |
T |
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| Q |
218 |
atgtgccgtgaccatgaagataactcccggagaattcgccctcatactttgctcctgatgtccat |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36951253 |
atgtgccgtgaccatgaagataactcccggagaattcgccctcatactttgctcctgatggccat |
36951189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 38453989 - 38454047
Alignment:
| Q |
19 |
cttccatctattttcccttttttccaatttccaatatagatacttccatcattccaagt |
77 |
Q |
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| T |
38453989 |
cttccatctcttttatcttttttccaatttccagtgtagatacctccatccttccaagt |
38454047 |
T |
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