View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8929_low_37 (Length: 275)

Name: NF8929_low_37
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8929_low_37
NF8929_low_37
[»] chr1 (1 HSPs)
chr1 (1-275)||(1717262-1717536)
[»] chr3 (22 HSPs)
chr3 (1-271)||(19812328-19812598)
chr3 (1-271)||(19956132-19956405)
chr3 (11-256)||(26653210-26653455)
chr3 (8-271)||(26647059-26647322)
chr3 (1-271)||(20036400-20036673)
chr3 (1-271)||(19818605-19818875)
chr3 (1-271)||(19849038-19849311)
chr3 (60-271)||(19838503-19838714)
chr3 (67-252)||(19951238-19951423)
chr3 (1-271)||(20015998-20016271)
chr3 (8-256)||(20046178-20046426)
chr3 (8-254)||(30914698-30914947)
chr3 (1-169)||(19853560-19853731)
chr3 (58-271)||(19989630-19989843)
chr3 (1-169)||(24839873-24840044)
chr3 (1-159)||(19858120-19858281)
chr3 (62-159)||(19943828-19943925)
chr3 (49-187)||(19971710-19971848)
chr3 (214-271)||(19832133-19832190)
chr3 (137-271)||(17114900-17115034)
chr3 (223-271)||(19943987-19944035)
chr3 (223-271)||(24839774-24839822)
[»] chr5 (2 HSPs)
chr5 (5-256)||(9815089-9815340)
chr5 (46-271)||(26354724-26354949)
[»] chr8 (6 HSPs)
chr8 (60-180)||(22651781-22651901)
chr8 (1-159)||(22689564-22689725)
chr8 (1-109)||(22685642-22685750)
chr8 (58-180)||(11564022-11564144)
chr8 (223-271)||(22689473-22689521)
chr8 (135-180)||(22685596-22685641)
[»] chr4 (2 HSPs)
chr4 (75-253)||(6397554-6397732)
chr4 (4-204)||(6398312-6398515)
[»] chr7 (5 HSPs)
chr7 (4-193)||(12581443-12581632)
chr7 (4-193)||(12497260-12497449)
chr7 (4-193)||(12521125-12521314)
chr7 (10-160)||(12519704-12519853)
chr7 (83-160)||(12495895-12495972)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 1717262 - 1717536
Alignment:
1 tttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatccta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1717262 tttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatccta 1717361  T
101 ttgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1717362 ttgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatag 1717461  T
201 attttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaagttt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1717462 attttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaagttt 1717536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 19812328 - 19812598
Alignment:
1 tttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatccta 100  Q
    ||||||||||||||||||||  ||| ||||||||||||||||  |||||||||||| ||||||||||| || ||| ||| ||||||||||||  ||||||    
19812328 tttcttgctacttggttgtcaatttttgtttttcctcataaatatttggtgaaaaagtctttgtttccgatcgctattcttcttgctagagggtatccta 19812427  T
101 ttgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatag 200  Q
    ||||||||||||| ||||| || |||||||||||||| ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| |||||    
19812428 ttgctttggcaccagctgtcttggctagcatatataaagatttaagtttgtttaagaaaacaattgttgatttgtcaaaatatcctgttggtggtgatag 19812527  T
201 attttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttggga-aggttcaaaa 271  Q
    |||| |   |||| ||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
19812528 atttcccttggagattactcttcaatcacccttttacttggttcaaatttgggt-ttgggagaggttcaaaa 19812598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 19956132 - 19956405
Alignment:
1 tttcttgctacttggttgtcggtttatgtttttcctcataaag---ctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatc 97  Q
    ||||||||||||||||||||  ||| |||||| |||||||||    |||  |||||||  | |||||||||||||| |||||||||||||||||||||||    
19956132 tttcttgctacttggttgtcaatttttgttttccctcataaatattcttccgtgaaaagttatttgtttcctattgttgttcatcttgctagaggaaatc 19956231  T
98 ctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcga 197  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||| ||||| ||    
19956232 ctattgctttggcaccagctgttttagctagcatatataaggatttaactttgttaaagaaaaaaacagttgatttgtcaaaatatcctgtgggtggtga 19956331  T
198 tagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 271  Q
    ||||| | ||   ||  ||| |||||||||||||||||||||||||||||||||||||| || |||||||||||    
19956332 tagatatccttcagaacttactcttcaatcacccttttacttggttcaaatttgggtgtgggaaaggttcaaaa 19956405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 26653210 - 26653455
Alignment:
11 cttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatcctattgctttggc 110  Q
    ||||||||||  ||| |||||||||||||| ||  || |||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
26653210 cttggttgtcaatttttgtttttcctcatatagaattagtgaaaagttctttgttttctattgctgttcatcttgctagaggaaatcctattgctttggc 26653309  T
111 accggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaag 210  Q
    ||| |||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| ||  |    
26653310 accagctgttttagctagtatatataaggacttgactttgtttaagaaaacaattgttggtttgtcaaaatattatgttggtggtgatagatttcctttg 26653409  T
211 gaggttagtcttcaatcacccttttacttggttcaaatttgggtgt 256  Q
    || |||| ||| | ||||||||||||||||||||||||||||||||    
26653410 gaagttaatctacgatcacccttttacttggttcaaatttgggtgt 26653455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 26647059 - 26647322
Alignment:
8 ctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatcctattgcttt 107  Q
    ||||||||||||| ||||||||||||||||||  |  |||||||||||  | ||||||||||||||||||||||||||||||||| ||||| ||||||||    
26647059 ctacttggttgtcagtttatgtttttcctcatctaaatttggtgaaaagttgtttgtttcctattgctgttcatcttgctagagggaatccaattgcttt 26647158  T
108 ggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttct 207  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | |||| ||||  ||||  | ||| |||||| ||||||| | ||    
26647159 ggcaccggctgttttagctagcttatataaggatttaagtttgtttaagaaaacacttgttgatttgaaaaaaatttctgatggtggtgatagatatcct 26647258  T
208 aaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 271  Q
      ||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||    
26647259 ttggaagttactcttcaatcacccttttacttggttcaaatttgggtgtgggaaaggttcaaaa 26647322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 20036673 - 20036400
Alignment:
1 tttcttgctacttggttgtcggtttatgtttttcctcataaagc---tttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatc 97  Q
    ||||||||||||||||||||  ||| ||||||||||||||||     |||||||||||  ||||||||||||||||||||  ||||||||||||||||||    
20036673 tttcttgctacttggttgtcactttttgtttttcctcataaaaactatttggtgaaaagttctttgtttcctattgctgtatatcttgctagaggaaatc 20036574  T
98 ctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcga 197  Q
     ||||||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||||||||| |||| ||||||||||| || ||||||||| ||    
20036573 gtattgctttagcacctgctgttttagctagtctatataaggatttaactttgtttaagaaaacaattgttgatttgtcaaaatgtcatgttggtggtga 20036474  T
198 tagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 271  Q
    |||| || ||   || |||| |||| ||||||||||||||||||||||||||||||||| ||  ||||||||||    
20036473 tagacttcctttagaagttactcttgaatcacccttttacttggttcaaatttgggtgtgggagaggttcaaaa 20036400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 19818605 - 19818875
Alignment:
1 tttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatccta 100  Q
    ||||||||||||||||| ||  ||| |||||||||||||||   |||||||||||| | | |||||||| |||||||| ||||||||||||| |||||||    
19818605 tttcttgctacttggttatcaatttttgtttttcctcataagaatttggtgaaaaattatctgtttcctgttgctgttaatcttgctagagggaatccta 19818704  T
101 ttgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatag 200  Q
    |||||||||||||||||||||| |||| ||| ||||| ||||||| |||||||||||||| |||||||| ||||||||||||| |||||||||| |||||    
19818705 ttgctttggcaccggctgttttggctaacatttataaagatttaagtttgtttaagaaaaaaatagttgatttgtcaaaatattctgttggtggtgatag 19818804  T
201 attttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 271  Q
    |||| ||   ||  ||| |||||||||||||||||| ||||||||||| ||||||| ||  ||||||||||    
19818805 atttcctttagaacttactcttcaatcacccttttatttggttcaaatatgggtgtgggagaggttcaaaa 19818875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 19849038 - 19849311
Alignment:
1 tttcttgctacttggttgtcggtttatgtttttcctcataaagc---tttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatc 97  Q
    ||||||||||||||||||||  ||| ||||||||||||||||     |||||||||||  ||||||||||||||||||||  ||||||||||||||||||    
19849038 tttcttgctacttggttgtcactttttgtttttcctcataaaaactatttggtgaaaagttctttgtttcctattgctgtatatcttgctagaggaaatc 19849137  T
98 ctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcga 197  Q
     ||||||||| ||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||   || ||||||||||| || ||||||||| ||    
19849138 gtattgctttagcacctgctgttttagctagtctatataaggatttaactttgtttaagaaaacaatcactgatttgtcaaaatgtcatgttggtggtga 19849237  T
198 tagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 271  Q
    ||||||| |   |||| ||| |||| ||||||||||||| ||||||||||||||||||| ||  ||||||||||    
19849238 tagatttcccttggagattactcttaaatcacccttttatttggttcaaatttgggtgtgggagaggttcaaaa 19849311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 60 - 271
Target Start/End: Original strand, 19838503 - 19838714
Alignment:
60 tttgtttcctattgctgttcatcttgctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaa 159  Q
    ||||||||| |||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
19838503 tttgtttccaattgttgttcatcttgctagaggaaattctattgctttggcaccagctgttttagctagcatatataatgatttaactttgttaaagaaa 19838602  T
160 acaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgg 259  Q
    | || ||||| |||||||||| ||||||||||| | |||| || | ||   || |||| |||||||||||||||||||||||||||||||||||||| ||    
19838603 aaaacagttgatttgtcaaaacatcctgttggttgtgatacatatcctttagaagttactcttcaatcacccttttacttggttcaaatttgggtgtggg 19838702  T
260 gaaggttcaaaa 271  Q
      ||||||||||    
19838703 agaggttcaaaa 19838714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 67 - 252
Target Start/End: Original strand, 19951238 - 19951423
Alignment:
67 cctattgctgttcatcttgctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatag 166  Q
    ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||| |    
19951238 cctattgctattcatcttgctagaggaaatcctattgctttggctccagctgttttagctagcatatataaggatttaactttgtttaaaaaagcaattg 19951337  T
167 ttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgg 252  Q
    ||| |||||||||||||| ||| ||||| ||||||| | ||   ||  ||| ||||||||||||||||||||||||||||||||||    
19951338 ttgatttgtcaaaatatcatgtgggtggtgatagatatcctttagaacttactcttcaatcacccttttacttggttcaaatttgg 19951423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 20016271 - 20015998
Alignment:
1 tttcttgctacttggttgtcggtttatgtttttcctcataaag---ctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatc 97  Q
    ||||||||||||||| ||||  ||| |||||| |||||||||    |||  |||||||  | ||||||||| |||||| |||||||||||||| ||||||    
20016271 tttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttccgattgctattcatcttgctagacgaaatc 20016172  T
98 ctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcga 197  Q
    |||||||||||||||| ||||| || |||||||||||||| ||||||| |||||||||||||||||| |||| |||||||||||||| ||| ||||| ||    
20016171 ctattgctttggcaccagctgtcttggctagcatatataaagatttaagtttgtttaagaaaacaattgttgatttgtcaaaatatcatgtgggtggtga 20016072  T
198 tagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 271  Q
    ||| | | ||   || ||||  |||||||||||| |||| ||||||||||||||||||| ||  ||||||||||    
20016071 taggtatcctttagaagttacacttcaatcacccatttatttggttcaaatttgggtgtgggagaggttcaaaa 20015998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 20046178 - 20046426
Alignment:
8 ctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatcctattgcttt 107  Q
    |||||||||||||  ||| ||||||||||||||||  | |||||||||| | ||||||| |||||||| || ||||||||||||||||||| ||||||||    
20046178 ctacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgctattaatcttgctagaggaaatccaattgcttt 20046277  T
108 ggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttct 207  Q
    |||||| |||||||| | |||||||||||||||||||| ||| |||||||| |||||  ||| | ||| ||||||||| |||||||| ||||||||| ||    
20046278 ggcacctgctgttttgggtagcatatataaggatttaagtttatttaagaacacaattattgatctgttaaaatatccggttggtggtgatagatttcct 20046377  T
208 aaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgt 256  Q
       ||  ||| | ||| |||||||||||| ||||||||| |||||||||    
20046378 gttgaatttactattctatcacccttttatttggttcaagtttgggtgt 20046426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 30914698 - 30914947
Alignment:
8 ctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgc---tgttcatcttgctagaggaaatcctattgc 104  Q
    |||||||||||||  ||| |||||| ||||| |||| |||||||||||  | |||||||||||||||   | |||||||||||||||| ||   | ||||    
30914698 ctacttggttgtcaatttttgttttccctcacaaagatttggtgaaaagttttttgtttcctattgcgcctattcatcttgctagagggaacattgttgc 30914797  T
105 tttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattt 204  Q
     || |||||       || ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| |    
30914798 attagcaccaaaaaaattggctagcatatacaaagatttaagtttgtttaagaaaacaatagttggtttgtcaaaatatcaagttggtggtgatagatgt 30914897  T
205 tctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggt 254  Q
     ||| |||||||| |||||| ||||||||| ||||||| |||||||||||    
30914898 cctatggaggttactcttcactcaccctttgacttggtacaaatttgggt 30914947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 19853560 - 19853731
Alignment:
1 tttcttgctacttggttgtcggtttatgtttttcctcataaag-ctttg--gtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatc 97  Q
    ||||||||||||||||||||  ||| |||||||||||||| |  ||||   ||||||| ||||||||||||||||||| ||| |||||||||||| |||     
19853560 tttcttgctacttggttgtctatttttgtttttcctcatagatactttattgtgaaaagatctttgtttcctattgctattcgtcttgctagaggtaata 19853659  T
98 ctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttg 169  Q
    |||||||||||||||| |||||||| |||||| ||||||| ||||| | |||||||||||||| ||| ||||    
19853660 ctattgctttggcacctgctgttttggctagcttatataacgatttgagtttgtttaagaaaaaaattgttg 19853731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 271
Target Start/End: Original strand, 19989630 - 19989843
Alignment:
58 tctttgtttcctattgctgttcatcttgctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaaga 157  Q
    ||||| |||| | ||||| |||||||||||||||||||||||||||| || ||||| || ||||| |||||  | ||||||||||||  |||  ||||||    
19989630 tctttctttcgtgttgctattcatcttgctagaggaaatcctattgcattagcacctgcagttttggctagtttgtataaggatttaggtttacttaaga 19989729  T
158 aaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgtt 257  Q
    | | | |||||  ||||||||||  |||||||||||| |||||| || | | ||||| || |||||||||||||||||||||||||||| ||||||| ||    
19989730 acatattagttaatttgtcaaaacttcctgttggtggtgatagacttcccatggaggctattcttcaatcacccttttacttggttcaagtttgggt-tt 19989828  T
258 ggga-aggttcaaaa 271  Q
    |||| ||||||||||    
19989829 gggagaggttcaaaa 19989843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 24840044 - 24839873
Alignment:
1 tttcttgctacttggttgtcggtttatgtttttcctcataaag---ctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatc 97  Q
    ||||||||||||||||||||  ||| |||||| |||||||||    || | ||||||   |||||||||||| ||||||||||||| |||||||| ||||    
24840044 tttcttgctacttggttgtcaatttttgttttccctcataaatactctctagtgaaatgttctttgtttcctgttgctgttcatctagctagagggaatc 24839945  T
98 ctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttg 169  Q
    ||||| |||||||||| |||||||| |||||| ||||||| |||||||  ||||||||||| ||||| ||||    
24839944 ctatttctttggcacctgctgttttggctagcttatataacgatttaaggttgtttaagaacacaattgttg 24839873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 19858120 - 19858281
Alignment:
1 tttcttgctacttggttgtcggtttatgtttttcctcataaag-ctttg--gtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatc 97  Q
    ||||||||||||||||||||  ||| |||||||||| ||| |  ||||   ||||||| ||||||||||||||||||| ||  ||||||||||||||||     
19858120 tttcttgctacttggttgtcaatttttgtttttcctaatagatactttaatgtgaaaagatctttgtttcctattgctattggtcttgctagaggaaata 19858219  T
98 ctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaa 159  Q
    |||| ||||||||||| |||||||| |||||| ||||||| ||||| | |||||||||||||    
19858220 ctatcgctttggcacctgctgttttggctagcttatataacgatttgagtttgtttaagaaa 19858281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 159
Target Start/End: Original strand, 19943828 - 19943925
Alignment:
62 tgtttcctattgctgttcatcttgctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaa 159  Q
    ||||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||| |||||| ||||||||||||| | |||||||||||||    
19943828 tgtttcctattgctgttcatcttgctagagggattcctatggctttggcacctgctgttttggctagcttatataaggatttgagtttgtttaagaaa 19943925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 19971710 - 19971848
Alignment:
49 gtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggatttaactt 148  Q
    |||||||  |||||||||||||||||| ||||| | | |||||| ||| ||||||||||||||||  ||||||| |||||| |||||||||||| ||||     
19971710 gtgaaaagttctttgtttcctattgctattcatttggttagaggcaatactattgctttggcaccaactgttttggctagcttatataaggattgaactc 19971809  T
149 tgtttaagaaaacaatagttggtttgtcaaaatatcctg 187  Q
    |||||||||||  ||| |||| ||||  |||||||||||    
19971810 tgtttaagaaacaaattgttgatttgaaaaaatatcctg 19971848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 19832133 - 19832190
Alignment:
214 gttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 271  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||  ||||||||||    
19832133 gttactcttcaatcacccttttacttggttcaaatttgggtgtgggagaggttcaaaa 19832190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 271
Target Start/End: Original strand, 17114900 - 17115034
Alignment:
137 aggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccctttta 236  Q
    ||||||| ||||||||||||||||| ||  ||| |||||||||| ||||||||  ||| ||||||||| ||   || |||  || || |   ||||||||    
17114900 aggatttgactttgtttaagaaaactattattgatttgtcaaaaaatcctgtttatggtgatagatttcctttagaagttgctcgtcgaatgccctttta 17114999  T
237 cttggttcaaatttgggtgttgggaaggttcaaaa 271  Q
    |||||||||||||||| ||| ||  ||||||||||    
17115000 cttggttcaaatttggatgtgggagaggttcaaaa 17115034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 19943987 - 19944035
Alignment:
223 caatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 271  Q
    ||||||||||||||| |||||||| ||||||| | || |||||||||||    
19943987 caatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaa 19944035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 24839822 - 24839774
Alignment:
223 caatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 271  Q
    ||||||||||||||| |||||||| ||||||| | || |||||||||||    
24839822 caatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaa 24839774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 9815089 - 9815340
Alignment:
5 ttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatcctattgc 104  Q
    ||||||| ||||||||  | | ||||||  |||||||| ||||||||||||  ||||||||| |||||||| |||||||||||||||||||| |||||||    
9815089 ttgctacgtggttgtcaatctttgttttaactcataaatctttggtgaaaagttctttgttttctattgctattcatcttgctagaggaaattctattgc 9815188  T
105 tttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattt 204  Q
    ||||||||| |||||||||||||| || ||||| ||||||| ||||||||||||||||||||||  |||||||||||   |||||||||| ||||||| |    
9815189 tttggcaccagctgttttagctagtatttataacgatttaagtttgtttaagaaaacaatagttaatttgtcaaaattatctgttggtggtgatagatat 9815288  T
205 tctaaggaggttagtcttcaatcacccttttacttggttcaaatttgggtgt 256  Q
     ||   || |||| ||||||||||||||||||||||||||||||||||||||    
9815289 cctttagaagttactcttcaatcacccttttacttggttcaaatttgggtgt 9815340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 46 - 271
Target Start/End: Complemental strand, 26354949 - 26354724
Alignment:
46 ttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggatttaa 145  Q
    ||||||||||  |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
26354949 ttggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaa 26354850  T
146 ctttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttca 245  Q
       ||||||||||||| || |||| |||||||||||   |||||||||| ||||||| | ||   || |||| |||||||||||| ||||||||||||||    
26354849 gcgtgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttca 26354750  T
246 aatttgggtgttgggaaggttcaaaa 271  Q
    ||||||||||| ||  ||||||||||    
26354749 aatttgggtgtgggagaggttcaaaa 26354724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 22651901 - 22651781
Alignment:
60 tttgtttcctattgctgttcatcttgctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaa 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||    
22651901 tttgtttcctattgctgttcatcttgctagaggaaatcctattgcttttgcaccagctgttttggctagcatgtataaggatttaactttgtttaagaaa 22651802  T
160 acaatagttggtttgtcaaaa 180  Q
    ||||| |||| ||||||||||    
22651801 acaattgttgatttgtcaaaa 22651781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 22689725 - 22689564
Alignment:
1 tttcttgctacttggttgtcggtttatgtttttcctcataaagctttg---gtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatc 97  Q
    ||||||||||||||||||||  ||| ||||||||||||||||  | ||   || ||||  ||||||||| ||||| || ||||||| |||||||| |||     
22689725 tttcttgctacttggttgtcaatttttgtttttcctcataaaaatatgtcggtcaaaagttctttgtttactatttctattcatctggctagaggcaata 22689626  T
98 ctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaa 159  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| | |||||||||||||    
22689625 ctattgctttggcacctgctgttttggctagcatatataaggatttgagtttgtttaagaaa 22689564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 22685750 - 22685642
Alignment:
1 tttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatccta 100  Q
    ||||||||| ||||||||||  ||| ||||||||||||||||  |||||||||||  ||| ||||||| |||||| |||||||||||||||| |||||||    
22685750 tttcttgctgcttggttgtcactttttgtttttcctcataaaattttggtgaaaacttctatgtttccgattgctattcatcttgctagagggaatccta 22685651  T
101 ttgctttgg 109  Q
    |||||||||    
22685650 ttgctttgg 22685642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 11564144 - 11564022
Alignment:
58 tctttgtttcctattgctgttcatcttgctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaaga 157  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | ||| | ||| || |||||||||||||   ||||||||||     
11564144 tctttgtttcctattgctgttcatcttgctagaggaaaacctattgctttagcaccgtcggttctggcttgcttatataaggatttgcgtttgtttaagg 11564045  T
158 aaacaatagttggtttgtcaaaa 180  Q
    | ||||| ||||| ||| |||||    
11564044 agacaattgttggattgacaaaa 11564022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 22689521 - 22689473
Alignment:
223 caatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 271  Q
    |||||||||||||||||||||||| ||||||||| ||  ||||||||||    
22689521 caatcacccttttacttggttcaagtttgggtgtgggagaggttcaaaa 22689473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 22685641 - 22685596
Alignment:
135 taaggatttaactttgtttaagaaaacaatagttggtttgtcaaaa 180  Q
    ||||||||||| ||| |||||||||||||| |||| ||||||||||    
22685641 taaggatttaagtttttttaagaaaacaattgttgatttgtcaaaa 22685596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 75 - 253
Target Start/End: Complemental strand, 6397732 - 6397554
Alignment:
75 tgttcatcttgctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttg 174  Q
    |||| |||||||||||| |||||| ||||||||||||||  ||||||| |||| |||||||||||||||| |||| ||||||||||||||  ||| ||||    
6397732 tgttaatcttgctagagaaaatccaattgctttggcaccatctgttttggctatcatatataaggatttatctttatttaagaaaacaattattgatttg 6397633  T
175 tcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaatttggg 253  Q
    || ||||||| ||||||||  |||| ||||  |   ||  ||| ||||| |||||| ||||||||||||||| ||||||    
6397632 tcgaaatatcttgttggtgatgataaatttcatgttgaatttactcttctatcacctttttacttggttcaagtttggg 6397554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 6398312 - 6398515
Alignment:
4 cttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatcctattg 103  Q
    ||||||| ||||||||   ||| ||||||||||  |||| |  |||||||||  | ||||||| ||||||||||| |||| |||||||||||||| || |    
6398312 cttgctaattggttgttaatttttgtttttcctagtaaaacaatggtgaaaagttgtttgttttctattgctgttaatctcgctagaggaaatccaatcg 6398411  T
104 ctttggcaccggctgttttagctagc--atatataaggatttaactttgtttaag-aaaacaatagttggtttgtcaaaatatcctgttggtggcgatag 200  Q
     ||||||||| |||||||||||||||  |||||||||||||||||||| |||||| |||| |||  ||| | |||||||||||| ||||| ||  |||||    
6398412 gtttggcaccagctgttttagctagcatatatataaggatttaactttatttaagaaaaaaaattattgatatgtcaaaatatcatgttgatgatgatag 6398511  T
201 attt 204  Q
    ||||    
6398512 attt 6398515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 4 - 193
Target Start/End: Original strand, 12581443 - 12581632
Alignment:
4 cttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatcctattg 103  Q
    |||||||||||||||||  ||| ||||||||||| || |    |||||||||  | ||||||| |||||||| || ||||||||||| ||||||  |||     
12581443 cttgctacttggttgtcaatttttgtttttcctcgtagaaaaatggtgaaaagttatttgttttctattgctattaatcttgctagaagaaatcgaatta 12581542  T
104 ctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtg 193  Q
    ||||| | |   ||||||| ||||||||| |||||||||||||||| ||||||||||||||  ||| | |||||||||||| ||||||||    
12581543 ctttgccgcaaactgttttggctagcataaataaggatttaactttatttaagaaaacaattattgatctgtcaaaatatcttgttggtg 12581632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 193
Target Start/End: Original strand, 12497260 - 12497449
Alignment:
4 cttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatcctattg 103  Q
    |||||||| ||||||||  ||| |||||||||||||| |    |||||| ||  | ||||||| |||||||| || ||||||||||| ||||||  |||     
12497260 cttgctacctggttgtcaatttttgtttttcctcatagaaaaatggtgataagttatttgttttctattgctattaatcttgctagaagaaatcaaatta 12497359  T
104 ctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtg 193  Q
    ||||| | || |||||||| ||||||||| |||| ||||||||||| ||||||||||||||  ||| | |||||||| ||| | ||||||    
12497360 ctttgccgccagctgttttggctagcataaataacgatttaactttatttaagaaaacaattattgatctgtcaaaacatcttattggtg 12497449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 193
Target Start/End: Original strand, 12521125 - 12521314
Alignment:
4 cttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatcctattg 103  Q
    |||||||| ||||||||  ||| |||||||||||||| |    |||||| ||  | ||||||| |||||||| || ||||||||||| ||||||  |||     
12521125 cttgctacctggttgtcaatttttgtttttcctcatagaaaaatggtgataagttatttgttttctattgctattaatcttgctagaagaaatcaaatta 12521224  T
104 ctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtg 193  Q
    ||||| | || |||||||| ||||||||| |||| ||||||||||| ||||||||||||||  ||| | |||||||| ||| | ||||||    
12521225 ctttgccgccagctgttttggctagcataaataacgatttaactttatttaagaaaacaattattgatctgtcaaaacatcttattggtg 12521314  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 12519853 - 12519704
Alignment:
10 acttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatcctattgctttgg 109  Q
    |||||||||||  ||| ||||||||||||||||    |||||| ||| | ||||||| || ||| |||| ||||||||||| ||||||| ||||||||||    
12519853 acttggttgtcaatttttgtttttcctcataaa-aaatggtgacaaattgtttgttttctgttggtgttaatcttgctagaagaaatccaattgctttgg 12519755  T
110 caccggctgttttagctagcatatataaggatttaactttgtttaagaaaa 160  Q
       | | |||||| ||||||||| ||||||| |||||||| ||||||||||    
12519754 tggcagttgttttggctagcataaataaggacttaactttatttaagaaaa 12519704  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 12495972 - 12495895
Alignment:
83 ttgctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaagaaaa 160  Q
    |||||||| ||||||| ||||||||||   | | |||||| ||||||||| |||||||||||||||| ||||| ||||    
12495972 ttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaataaaa 12495895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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