View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8929_low_6 (Length: 674)

Name: NF8929_low_6
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8929_low_6
NF8929_low_6
[»] chr5 (1 HSPs)
chr5 (14-663)||(13234152-13234801)


Alignment Details
Target: chr5 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 14 - 663
Target Start/End: Complemental strand, 13234801 - 13234152
Alignment:
Q  14 catttgatccaaaagtttcattagtctgatactcattcatcaagagtccttcataagggtatgtcattgtcgaaaccttgttcatccaacgccaataaag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234801 catttgatccaaaagtttcattagtctgatactcattcatcaagagtccttcataagggtatgtcattgtcgaaaccttgttcatccaacgccaataaag 13234702  T
Q  114 cggaatatcctcgctgctcaagaagtatccacaaaacaagaaaaacaaggcagtgaaggctatcacagcagcataacccaagatatagtttggaacaatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234701 cggaatatcctcgctgctcaagaagtatccacaaaacaagaaaaacaaggcagtgaaggctatcacagcagcataacccaagatatagtttggaacaatt 13234602  T
Q  214 gaactcacaaacacaacaaacgaatttgtcgaaagaagagaaatgaagagaacaaggaagaagtatataaatgggcctctaagttctaaagcaaaccaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234601 gaactcacaaacacaacaaacgaatttgtcgaaagaagagaaatgaagagaacaaggaagaagtatataaatgggcctctaagttctaaagcaaaccaaa 13234502  T
Q  314 caatggcagcataggctaaagcttggagcgcaagaaacggcatgtgagtgattaggctagctatggtgtaacaagaagctctataggcattatgagaagt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234501 caatggcagcataggctaaagcttggagcgcaagaaacggcatgtgagtgattaggctagctatggtgtaacaagaagctctataggcattatgagaagt 13234402  T
Q  414 ttcgcggatgaagatgaacctctcttggatgaaggcagggaccgcatcatttgaagagaagaaaaacagacacactgtgaaaatgaagaaactgagacga 513  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234401 ttcgcggatgaagatgaacctctcttggatgaaggcagggacggcatcatttgaagagaagaaaaacagacacactgtgaaaatgaagaaactgagacga 13234302  T
Q  514 tttgtgattccttgtaaggtattttttggattgtggaacattgttgccatcataactcccatgaaggtgaggaccattagtcttgatagaaaaagctcgg 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234301 tttgtgattccttgtaaggtattttttggattgtggaacattgttgccatcataactcccatgaaggtgaggaccattagtcttgatagaaaaagctcgg 13234202  T
Q  614 gggttctccgtatgttggtgaagttgcggcgcattaggatccatgtctct 663  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13234201 gggttctccgtatgtttgtgaagttgcggcgcattaggatccatgtctct 13234152  T

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