View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8929_low_7 (Length: 653)
Name: NF8929_low_7
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8929_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 13 - 637
Target Start/End: Original strand, 47581440 - 47582062
Alignment:
| Q |
13 |
attatactgtgtattctttggctacgtgtgtaagttctcgctaactaattgtctttgtaagatttttggttaggtcattgtcagcgtatagaaattaaca |
112 |
Q |
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| T |
47581440 |
attatactgtatattctttggctacgtgtgtaagttctcgctaactaattgtctttgtaagatttttggttaggtcactgtcagcgtatagaaattaaca |
47581539 |
T |
|
| Q |
113 |
tttgacaagatttttgtaacttgggatatgtagcttctgcgggtcttggttttctccagttctgtaatctcaatagtttcagaaccaaatttgtgttagg |
212 |
Q |
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| T |
47581540 |
tttgacaagatttttgtaacttggaatatgtagcttctgcgggtcttggttttctccagttctgtaatctcaatagtttcagaaccaaatttgtgttagg |
47581639 |
T |
|
| Q |
213 |
cttctcattcttcattggtgtctctataccgcaatatttcactgaatattatcaagtaaaacaggaacatgcaggtcctagatgggtgagattatctgaa |
312 |
Q |
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| T |
47581640 |
cttctcattcttcattggtgtctctataccgcaatatttcactgaatattatcaagtaaaacaggaacatgcaggtcctagatgggtgagattatctgaa |
47581739 |
T |
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| Q |
313 |
actaaaccaattgttgaaaacttcgtgataaatatatnnnnnnnncactatctatttttatgattgatttccgtaatatttcaatgcattttcagttcaa |
412 |
Q |
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| T |
47581740 |
actaaaccaattgttgaaaacttcgtgataaatata--aaaaaaacactatctatttttatgattgatttccgtaatatttcaatgcattttcagttcaa |
47581837 |
T |
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| Q |
413 |
tgatattgtgactgtcatattcgcttcacacacgatggtggctgccttggttgctttcattttggatttcacactcacccgtgaagatgatgcagcccgt |
512 |
Q |
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| T |
47581838 |
tgatattgtgactgtcatattcgcttcacacacaatggtggctgccttggttgctttcattttggatttcacactcacccgtgaagatgatgcagcccgt |
47581937 |
T |
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| Q |
513 |
gatgacagtggtttgaaatggtgggagaagttcagtatctatggatctgatgttagaagcaatgaattctatggtttaccatgcagactcaacgagtttt |
612 |
Q |
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| T |
47581938 |
gatgacaatggtttgaaatggtgggagaagttcagtatctatggatctgatgttagaagcaatgaattctatggtttaccatgcagactcaacgagtttt |
47582037 |
T |
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| Q |
613 |
ttccagccctttaaccagtctcttt |
637 |
Q |
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| T |
47582038 |
ttccagccctttaaccagtctcttt |
47582062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 8685473 - 8685559
Alignment:
| Q |
139 |
tatgtagcttctgcgggtcttggttttctccagttctgtaatctcaatagtttcagaaccaaatttgtgttaggcttctcattcttc |
225 |
Q |
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| T |
8685473 |
tatgtagcttctgctggtcttggttttatccagttctgtaacctcaacagtttcagaaccaaatttgtgctaggcttctcattcttc |
8685559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 453 - 544
Target Start/End: Original strand, 8685766 - 8685857
Alignment:
| Q |
453 |
gctgccttggttgctttcattttggatttcacactcacccgtgaagatgatgcagcccgtgatgacagtggtttgaaatggtgggagaagtt |
544 |
Q |
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| T |
8685766 |
gctgcattggttgcattaattttggatctcacacttactcgcgaagatgatgcagctaaaaatgacagtggtttaaaatggtgggagaagtt |
8685857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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