View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8929_low_8 (Length: 620)

Name: NF8929_low_8
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8929_low_8
NF8929_low_8
[»] chr5 (17 HSPs)
chr5 (11-620)||(499083-499691)
chr5 (581-617)||(14706205-14706241)
chr5 (579-620)||(14331476-14331517)
chr5 (579-620)||(42034170-42034211)
chr5 (574-613)||(14932413-14932452)
chr5 (579-618)||(39594919-39594958)
chr5 (579-617)||(17369316-17369354)
chr5 (574-620)||(31208582-31208628)
chr5 (579-617)||(36796626-36796664)
chr5 (579-617)||(41419432-41419470)
chr5 (579-617)||(41534551-41534589)
chr5 (579-620)||(34205351-34205392)
chr5 (579-620)||(42647000-42647041)
chr5 (572-620)||(14980619-14980667)
chr5 (582-618)||(22209746-22209782)
chr5 (574-618)||(32197845-32197889)
chr5 (579-615)||(35299880-35299916)
[»] chr7 (19 HSPs)
chr7 (138-445)||(25503477-25503789)
chr7 (65-515)||(25638228-25638677)
chr7 (194-432)||(25485189-25485426)
chr7 (11-457)||(25477780-25478231)
chr7 (191-431)||(25435457-25435696)
chr7 (191-365)||(25446320-25446493)
chr7 (579-617)||(30812251-30812289)
chr7 (579-620)||(1418529-1418570)
chr7 (579-619)||(11619077-11619117)
chr7 (585-617)||(32730173-32730205)
chr7 (579-618)||(19302482-19302521)
chr7 (579-618)||(33266405-33266444)
chr7 (575-610)||(40598400-40598435)
chr7 (581-619)||(33673188-33673226)
chr7 (574-616)||(34036031-34036073)
chr7 (579-617)||(47046027-47046065)
chr7 (581-618)||(9210933-9210970)
chr7 (580-620)||(7513669-7513709)
chr7 (579-619)||(30748953-30748993)
[»] chr2 (22 HSPs)
chr2 (87-491)||(35054035-35054438)
chr2 (87-517)||(35176912-35177341)
chr2 (222-517)||(35183004-35183298)
chr2 (251-514)||(35045210-35045472)
chr2 (12-70)||(35104807-35104865)
chr2 (579-620)||(15370242-15370283)
chr2 (579-620)||(22878208-22878249)
chr2 (579-618)||(18179061-18179100)
chr2 (579-618)||(27317491-27317530)
chr2 (579-618)||(30331863-30331902)
chr2 (11-102)||(35044967-35045058)
chr2 (579-617)||(40837356-40837394)
chr2 (579-620)||(1830149-1830190)
chr2 (579-620)||(4350800-4350841)
chr2 (579-620)||(8017544-8017585)
chr2 (579-620)||(30990358-30990399)
chr2 (579-620)||(31982409-31982450)
chr2 (580-617)||(40059381-40059418)
chr2 (580-617)||(40085281-40085318)
chr2 (579-620)||(40759270-40759311)
chr2 (571-619)||(27317018-27317066)
chr2 (585-617)||(41516949-41516981)
[»] chr1 (12 HSPs)
chr1 (579-620)||(6292602-6292643)
chr1 (579-618)||(41505786-41505825)
chr1 (581-620)||(51929383-51929422)
chr1 (582-620)||(10199330-10199368)
chr1 (571-617)||(15784909-15784955)
chr1 (581-611)||(18403128-18403158)
chr1 (570-620)||(38246974-38247024)
chr1 (579-620)||(24460320-24460361)
chr1 (579-620)||(32958747-32958788)
chr1 (579-616)||(50644174-50644211)
chr1 (579-611)||(28262490-28262522)
chr1 (581-617)||(29793619-29793655)
[»] chr8 (8 HSPs)
chr8 (579-618)||(38602439-38602478)
chr8 (580-620)||(4560612-4560652)
chr8 (579-618)||(30251373-30251412)
chr8 (579-617)||(2606162-2606200)
chr8 (574-620)||(35928644-35928690)
chr8 (579-620)||(18331824-18331865)
chr8 (579-620)||(32976483-32976524)
chr8 (579-620)||(43368619-43368660)
[»] chr4 (19 HSPs)
chr4 (579-618)||(27043749-27043788)
chr4 (231-331)||(31245085-31245185)
chr4 (576-619)||(1133039-1133082)
chr4 (579-618)||(17822784-17822823)
chr4 (574-617)||(24193645-24193688)
chr4 (581-620)||(32420979-32421018)
chr4 (579-618)||(42403942-42403981)
chr4 (579-618)||(49940086-49940125)
chr4 (580-618)||(15173223-15173261)
chr4 (579-620)||(22662170-22662211)
chr4 (579-620)||(22666649-22666690)
chr4 (579-620)||(28259383-28259424)
chr4 (305-334)||(31159291-31159320)
chr4 (579-620)||(53034718-53034759)
chr4 (576-620)||(19305036-19305080)
chr4 (306-334)||(31019843-31019871)
chr4 (306-334)||(31029724-31029752)
chr4 (306-334)||(31489675-31489703)
chr4 (580-620)||(32831438-32831478)
[»] chr3 (9 HSPs)
chr3 (579-616)||(26990144-26990181)
chr3 (574-618)||(25447159-25447203)
chr3 (579-618)||(16072960-16072999)
chr3 (574-620)||(1288763-1288809)
chr3 (579-620)||(21872214-21872255)
chr3 (581-618)||(26911703-26911740)
chr3 (579-619)||(2081002-2081042)
chr3 (582-618)||(33405114-33405150)
chr3 (579-619)||(41155280-41155320)
[»] chr6 (10 HSPs)
chr6 (579-618)||(20861617-20861656)
chr6 (579-618)||(21405073-21405112)
chr6 (579-620)||(4308887-4308928)
chr6 (579-616)||(9202904-9202941)
chr6 (579-612)||(31776191-31776224)
chr6 (579-616)||(33027706-33027743)
chr6 (579-620)||(33068521-33068562)
chr6 (579-616)||(33089620-33089657)
chr6 (579-619)||(31624371-31624411)
chr6 (579-611)||(35070573-35070605)


Alignment Details
Target: chr5 (Bit Score: 561; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 11 - 620
Target Start/End: Original strand, 499083 - 499691
Alignment:
Q  11 gattattctacttcctccacaaagcaatttcggatttatatgcaattcctgtaattgctcaatttgatcaatatcatcaagaactacaaggagctttatg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  499083 gattattctacttcctccacaaagcaatttcggatttatatgcaattcctgtaattgctcaatttgatcaatatcatcaagaactacaaggagttttatg 499182  T
Q  111 ttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499183 ttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacag 499282  T
Q  211 caacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagt 310  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499283 caacacatccaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagt 499382  T
Q  311 tgtcttccctattccacccatccccccgtattcctaaaacgcgaaaaccatcatctgctgaccttaacttcaaaagcctttctaaggcttctacacgagg 410  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499383 tgtcttccctattccacccat-cccccgtattcctaaaacgcgaaagccatcatctgctgaccttaacttcaaaagcctttctaaggcttctacacgagg 499481  T
Q  411 ttgtattccaataaggtcatcaacaaagcctgagaatttatgacccagtgaatttattacttcttgaacaattttttcaatctcttcaagctcaggcctg 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  499482 ttgtattccaataaggtcatcaacaaagcctgagaatttatgacccagtgaatttattacttcttgaacaattttttcaatctcttcaaactcaggcctg 499581  T
Q  511 aaagagaatgggaagttagatgactaagtcatgacctaagaaaagaaggnnnnnnncatatatgagtgtgtttggattgacttatttgagcttacctact 610  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  499582 aaagagaacgggaagttagatgactaagtcatgacctaagaaaagaaggaaaaaaacatatatgagtgtgtttggattgacttatttgagcttacctact 499681  T
Q  611 gacataagca 620  Q
    ||||||||||    
T  499682 gacataagca 499691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 581 - 617
Target Start/End: Original strand, 14706205 - 14706241
Alignment:
Q  581 tttggattgacttatttgagcttacctactgacataa 617  Q
    |||||||||||||||||||||||||||||||||||||    
T  14706205 tttggattgacttatttgagcttacctactgacataa 14706241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 14331517 - 14331476
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  14331517 tgtttggattgacttatttgagcttatctactgtcataagca 14331476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 42034211 - 42034170
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  42034211 tgtttggattagcttatttgagcttacctactgacataagca 42034170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 574 - 613
Target Start/End: Complemental strand, 14932452 - 14932413
Alignment:
Q  574 gagtgtgtttggattgacttatttgagcttacctactgac 613  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  14932452 gagtatgtttggattgacttatttgagcttatctactgac 14932413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Complemental strand, 39594958 - 39594919
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  39594958 tgtttggattgacttatttgagcttatctaccgacataag 39594919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 617
Target Start/End: Complemental strand, 17369354 - 17369316
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataa 617  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  17369354 tgtttggattgacttatttgaacttatctactgacataa 17369316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 620
Target Start/End: Complemental strand, 31208628 - 31208582
Alignment:
Q  574 gagtgtgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||| ||||||||||||||||||||| || | |||||||||||||||    
T  31208628 gagtctgtttggattgacttatttgaactgaactactgacataagca 31208582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 617
Target Start/End: Original strand, 36796626 - 36796664
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataa 617  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  36796626 tgtttggattgacttatttgagcttatctaatgacataa 36796664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 617
Target Start/End: Complemental strand, 41419470 - 41419432
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataa 617  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  41419470 tgtttggattgacttatttgagctaatctactgacataa 41419432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 617
Target Start/End: Complemental strand, 41534589 - 41534551
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataa 617  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  41534589 tgtttggattgacttatttgagctaatctactgacataa 41534551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 34205392 - 34205351
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||||||||||||| ||||  ||||||||||||||    
T  34205392 tgtttggattgacttatttgaacttatttactgacataagca 34205351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 42647041 - 42647000
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||| |||||||||||||| |||||||||| ||||    
T  42647041 tgtttggattggcttatttgagcttatctactgacattagca 42647000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 620
Target Start/End: Complemental strand, 14980667 - 14980619
Alignment:
Q  572 atgagtgtgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||| | |||||| ||||||||||||||||| |||||| ||||||||    
T  14980667 atgagtttatttggaatgacttatttgagcttatctactggcataagca 14980619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 618
Target Start/End: Original strand, 22209746 - 22209782
Alignment:
Q  582 ttggattgacttatttgagcttacctactgacataag 618  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  22209746 ttggattgacttatttgagcttatctactggcataag 22209782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 618
Target Start/End: Complemental strand, 32197889 - 32197845
Alignment:
Q  574 gagtgtgtttggattgacttatttgagcttacctactgacataag 618  Q
    |||| ||||||||||||||| |||||| ||| |||||||||||||    
T  32197889 gagtctgtttggattgacttttttgagtttatctactgacataag 32197845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 615
Target Start/End: Complemental strand, 35299916 - 35299880
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacat 615  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  35299916 tgtttggattgacttatttgagcttatctattgacat 35299880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 4e-46; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 138 - 445
Target Start/End: Original strand, 25503477 - 25503789
Alignment:
Q  138 gatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacagcaacacattcaccatctctataaattt 237  Q
    |||||||| |||||||| ||||| || |||||   |||| | | ||||||||||||||||||| ||||||||||||      ||||||||||||||||||    
T  25503477 gatatttcagaaggactgtatgcatccagatttggttctttcagagtttgatgaagaatttgtctctgcacagcaatggcaccaccatctctataaattt 25503576  T
Q  238 tgctaacattctcaataaagcaacaagcgtgaaactgata------tgagattttgtcatacaagaccgtcacaagagttgtcttccctattccacccat 331  Q
    |||||||||| || | ||| ||||||||   ||| |||||      ||||||  ||||||||||||| ||  ||||||||||||||||||| ||||||||    
T  25503577 tgctaacattttcgaaaaaacaacaagcaccaaattgataatgatgtgagatcctgtcatacaagacagttgcaagagttgtcttccctatgccacccat 25503676  T
Q  332 ccccccgtattcctaaaacgcgaaaaccatcatctgctgaccttaacttcaaaagcctttctaaggcttctacacgaggttgtattccaataaggtcatc 431  Q
    |||| |||||||||||||  | ||||||||| ||  ||||| |||| |||||||| |||||||| ||||| ||| ||||||||||||| ||||||||||     
T  25503677 cccc-cgtattcctaaaattcaaaaaccatcctccactgactttaaattcaaaagtctttctaatgcttcaacatgaggttgtattccgataaggtcata 25503775  T
Q  432 aacaaagcctgaga 445  Q
    | |||| |||||||    
T  25503776 agcaaatcctgaga 25503789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 65 - 515
Target Start/End: Complemental strand, 25638677 - 25638228
Alignment:
Q  65 ttgctcaatttgatcaatatcatcaagaactacaaggagctttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctct 164  Q
    ||||||||||||||||| ||  ||||||||||||||||||||| |||| ||||| |||| ||||||||| |  | |||||| | |||||| || |  |||    
T  25638677 ttgctcaatttgatcaacattgtcaagaactacaaggagctttttgttttgtagcctatctcttacaattcttgctatttcaggaggactgtacgtgtct 25638578  T
Q  165 agattcttttctcttatagtttgatgaagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaag 264  Q
    ||| | ||||||  ||||||| || ||||||||| |||||||||||||  |    | || |||  ||||||||||  ||||||||| ||  | |||| ||    
T  25638577 agaattttttcttctatagttcgacgaagaatttctttctgcacagcattagcaccgccctcttcataaattttgtgaacattctcgatgtaacaacgag 25638478  T
Q  265 cgtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttccctattccacccatccccccgtattcctaaaacgcgaaaaccatcat 364  Q
      | |||||||||||||||| ||||||||||||| ||  ||||||| ||||| |||||||||||||| ||||| ||||||||||||  |||||||| |||    
T  25638477 tatcaaactgatatgagattctgtcatacaagacagttgcaagagtagtctttcctattccacccat-cccccatattcctaaaacttgaaaaccaccat 25638379  T
Q  365 ctgctgaccttaacttcaaaagcctttctaaggcttctacacgaggttgtattccaataaggtcatcaacaaagcctgagaatttatgacccagtgaatt 464  Q
        ||| ||||  || | | | || ||||| ||||||| | ||||||||||||||||||| |||||| || | |  |||||||||||||||| |   ||    
T  25638378 tccttgagcttagttttagacgactctctaatgcttctataggaggttgtattccaataagatcatcagcagacctggagaatttatgacccaatttttt 25638279  T
Q  465 tattacttcttgaacaattttttcaatctcttcaagctcaggcctgaaaga 515  Q
    ||| ||  | | |||||||||||||||||| |||| ||| |||||||||||    
T  25638278 tatcacagcctcaacaattttttcaatctcatcaaactctggcctgaaaga 25638228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 194 - 432
Target Start/End: Complemental strand, 25485426 - 25485189
Alignment:
Q  194 aatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatac 293  Q
    ||||||||||||||||||||||    |||||||   ||||||||||||||| || |||||||| |||||||| | ||| ||| |||||||||||||||||    
T  25485426 aatttgtttctgcacagcaacagcaccaccatcctcataaattttgctaacgttttcaataaaacaacaagcatcaaattgaaatgagattttgtcatac 25485327  T
Q  294 aagaccgtcacaagagttgtcttccctattccacccatccccccgtattcctaaaacgcgaaaaccatcatctgctgaccttaacttcaaaagcctttct 393  Q
    || || ||  ||||||||||||||||||| ||| ||||  |||| |||||| ||||| ||| ||||||||||  |||| ||||  || |||||  | |||    
T  25485326 aaaacggtggcaagagttgtcttccctatgccatccat-accccatattcccaaaactcgacaaccatcatcctctgaacttagttttaaaaggttctct 25485228  T
Q  394 aaggcttctacacgaggttgtattccaataaggtcatca 432  Q
    || ||||||| | ||||||||||||||||||||||||||    
T  25485227 aatgcttctatatgaggttgtattccaataaggtcatca 25485189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 11 - 457
Target Start/End: Original strand, 25477780 - 25478231
Alignment:
Q  11 gattattctacttcctccacaaagcaatttcggatttatatgcaattcctgtaattgctcaatttgatcaatatcatcaagaactacaaggagctttatg 110  Q
    |||||||||||||||| |||||||  || | ||||||||||||||||| |||| |||| ||  |||||||| ||  || || ||||  |||||||| |      
T  25477780 gattattctacttcctgcacaaagggatataggatttatatgcaattcttgtagttgcacagattgatcaacattgtcgaggactagtaggagcttcaac 25477879  T
Q  111 ttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacag 210  Q
    |||| ||| || |||  || ||| |  |||||||| || ||||| ||| | || ||||| |||||| ||||||| ||||  |||||| ||||||||||||    
T  25477880 ttgtatagcctgtttgatataattccagatatttcagatggactgtatccttccagatttttttcttttatagtctgatctagaattcgtttctgcacag 25477979  T
Q  211 caacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatat------gagattttgtcatacaagaccgtcac 304  Q
    ||| |    |||||||||||||||||||||| |||| |||||  || |||||||| | ||| ||||||      |||||| |||||||||||||  |  |    
T  25477980 caatagcaccaccatctctataaattttgctgacatcctcaacgaaacaacaagcatcaaattgatattgatgggagattgtgtcatacaagacatttgc 25478079  T
Q  305 aagagttgtcttccctattccacccatccccccgtattcctaaaacgcgaaaaccatcatctgctgaccttaacttcaaaagcctttctaaggcttctac 404  Q
    |||||||||||| ||||| ||| |||| ||||| |||||||||||| ||| ||||||||||  |||| ||||  |  || |    ||||||  |||||||    
T  25478080 aagagttgtctttcctatgccatccat-cccccatattcctaaaactcgacaaccatcatcatctgaacttagttctaacataaattctaattcttctac 25478178  T
Q  405 acgaggttgtattccaataaggtcatcaacaaagcctgagaatttatgaccca 457  Q
     |||| ||||||||| || ||||||||| |||| |||||||| ||||||||||    
T  25478179 tcgagtttgtattccgatcaggtcatcagcaaaacctgagaacttatgaccca 25478231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 191 - 431
Target Start/End: Original strand, 25435457 - 25435696
Alignment:
Q  191 aagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtca 290  Q
    ||||||||||||||||||||||| |    |||| | |  ||||| ||||||||| ||||||| ||| |||||||| | ||| |||||||||||| |||||    
T  25435457 aagaatttgtttctgcacagcaatagcaccaccgttttcataaaatttgctaacgttctcaacaaaacaacaagcatcaaattgatatgagattctgtca 25435556  T
Q  291 tacaagaccgtcacaagagttgtcttccctattccacccatccccccgtattcctaaaacgcgaaaaccatcatctgctgaccttaacttcaaaagcctt 390  Q
    ||||| || ||  ||||||||||||| ||||||||| ||||  |||| |||||||||||| ||| ||||||||| | ||| ||||   || ||||| ||     
T  25435557 tacaaaacggtggcaagagttgtctttcctattccatccat-accccatattcctaaaactcgacaaccatcatgttctggcctttgttttaaaaggctc 25435655  T
Q  391 tctaaggcttctacacgaggttgtattccaataaggtcatc 431  Q
    ||||| ||||||| | ||||||||||||| |||||||||||    
T  25435656 tctaatgcttctatatgaggttgtattcctataaggtcatc 25435696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 191 - 365
Target Start/End: Complemental strand, 25446493 - 25446320
Alignment:
Q  191 aagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtca 290  Q
    |||||||||||||||||||||||||    ||||||||  ||||||||| ||||| || |||||||| |||||||| | ||| |||||||||||| |||||    
T  25446493 aagaatttgtttctgcacagcaacagcaccaccatcttcataaattttactaacgttttcaataaaacaacaagcatcaaattgatatgagattctgtca 25446394  T
Q  291 tacaagaccgtcacaagagttgtcttccctattccacccatccccccgtattcctaaaacgcgaaaaccatcatc 365  Q
    ||||| ||  |  |||||| |||||| ||||||||| ||||  || |||||||||| ||| ||| ||||||||||    
T  25446393 tacaaaactttagcaagagctgtctttcctattccatccat-acctcgtattcctacaactcgacaaccatcatc 25446320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 579 - 617
Target Start/End: Complemental strand, 30812289 - 30812251
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataa 617  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  30812289 tgtttggattgacttatttgagtttacctactgacataa 30812251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 1418570 - 1418529
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  1418570 tgtttggattgacttatttgagcttatctactggcataagca 1418529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 579 - 619
Target Start/End: Original strand, 11619077 - 11619117
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagc 619  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  11619077 tgtttggattggcttatttgagcttatctactgacataagc 11619117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 617
Target Start/End: Original strand, 32730173 - 32730205
Alignment:
Q  585 gattgacttatttgagcttacctactgacataa 617  Q
    |||||||||||||||||||||||||||||||||    
T  32730173 gattgacttatttgagcttacctactgacataa 32730205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 19302482 - 19302521
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  19302482 tgtttgaattgacttatttgagcttatctactgacataag 19302521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 33266405 - 33266444
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  33266405 tgtttggattgacttatttgagcttatctaccgacataag 33266444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 575 - 610
Target Start/End: Original strand, 40598400 - 40598435
Alignment:
Q  575 agtgtgtttggattgacttatttgagcttacctact 610  Q
    |||||||||||||||||||||||||||||| |||||    
T  40598400 agtgtgtttggattgacttatttgagcttatctact 40598435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 619
Target Start/End: Complemental strand, 33673226 - 33673188
Alignment:
Q  581 tttggattgacttatttgagcttacctactgacataagc 619  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  33673226 tttggattgactcatttgagcttatctactgacataagc 33673188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 616
Target Start/End: Complemental strand, 34036073 - 34036031
Alignment:
Q  574 gagtgtgtttggattgacttatttgagcttacctactgacata 616  Q
    |||| |||||| ||||||||||||||||||| |||||||||||    
T  34036073 gagtctgtttgaattgacttatttgagcttatctactgacata 34036031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 617
Target Start/End: Original strand, 47046027 - 47046065
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataa 617  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  47046027 tgtttggattgacttatttgtgcttatctactgacataa 47046065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 618
Target Start/End: Complemental strand, 9210970 - 9210933
Alignment:
Q  581 tttggattgacttatttgagcttacctactgacataag 618  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  9210970 tttggattgacttatttgagcttatctactgatataag 9210933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 580 - 620
Target Start/End: Complemental strand, 7513709 - 7513669
Alignment:
Q  580 gtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||| ||||||||||||||||||| |||||| ||||||||    
T  7513709 gtttgaattgacttatttgagcttatctactggcataagca 7513669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 619
Target Start/End: Original strand, 30748953 - 30748993
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagc 619  Q
    |||||| ||||| ||||||||||||| ||||||||||||||    
T  30748953 tgtttgaattgagttatttgagcttatctactgacataagc 30748993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 8e-38; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 87 - 491
Target Start/End: Original strand, 35054035 - 35054438
Alignment:
Q  87 tcaagaactacaaggagctttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagttt 186  Q
    |||||||||||||| | |||| |||||   ||||| || | |||||| |  |||||||| ||||| || |||| ||||||||  |||||   ||| ||||    
T  35054035 tcaagaactacaagaaactttctgttgcacagtcttttacgtacaattccagatatttcagaagggctgtatgtctctagatatttttcatctatggttt 35054134  T
Q  187 gatgaagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagatttt 286  Q
    |  |||| ||||||||||| | || ||||    ||||||||||||| |||||||| |||||||||||||| || |  || | ||| ||| | |||||| |    
T  35054135 gccgaaggatttgtttctggagagaaacagcaccaccatctctatagattttgcttacattctcaataaaacagcttgcatcaaattgagaggagattct 35054234  T
Q  287 gtcatacaagaccgtcacaagagttgtcttccctattccacccatccccccgtattcctaaaacgcgaaaaccatcatctgctgaccttaacttcaaaag 386  Q
     ||||||||||| | | ||||||||||||| || |||||| |||||||||   || |||| ||| ||||   |||||||  |||| ||||| ||||||||    
T  35054235 atcatacaagacagacgcaagagttgtctttccgattccagccatcccccaa-atacctacaactcgaagttcatcatcatctgagcttaatttcaaaag 35054333  T
Q  387 cctttctaaggcttctacacgaggttgtattccaataaggtcatcaacaaagcctgagaatttatgacccagtgaatttattacttcttgaacaattttt 486  Q
     ||||||||  ||||||| ||||||||| |  |||||||||||||| |||| ||||||||||||||||||| ||  ||||| || || |||||||| |||    
T  35054334 actttctaattcttctacccgaggttgtgtcgcaataaggtcatcagcaaaccctgagaatttatgacccaatgtttttatcacctcctgaacaatattt 35054433  T
Q  487 tcaat 491  Q
    |||||    
T  35054434 tcaat 35054438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 87 - 517
Target Start/End: Original strand, 35176912 - 35177341
Alignment:
Q  87 tcaagaactacaaggagctttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagttt 186  Q
    |||||||||||||| | |||| |||||   ||||| || | |||||| |  |||||||| ||||| || |||| |||||| || ||||| ||| | | ||    
T  35176912 tcaagaactacaagaaactttttgttgcaaagtcttttacgtacaattccagatatttcagaagggctgtatgtctctaggtttttttcacttgtggctt 35177011  T
Q  187 gatgaagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagatttt 286  Q
    |  |||| ||||||||||| ||||||       |||||||| ||||||||||||| |||||||||||||| ||    || | ||||||||| |||| | |    
T  35177012 gccgaaggatttgtttctgtacagcagtggcaccaccatctttataaattttgcttacattctcaataaaacagattgcatcaaactgataggagactct 35177111  T
Q  287 gtcatacaagaccgtcacaagagttgtcttccctattccacccatccccccgtattcctaaaacgcgaaaaccatcatctgctgaccttaacttcaaaag 386  Q
     ||||||||||| |   ||||||||||||| || |||||| |||||||||   || |||| ||  |||||  ||||||   ||||  |||| |||| |||    
T  35177112 atcatacaagacggaagcaagagttgtctttccgattccagccatcccccaa-atacctataaaacgaaagtcatcattgtctgagtttaatttcagaag 35177210  T
Q  387 cctttctaaggcttctacacgaggttgtattccaataaggtcatcaacaaagcctgagaatttatgacccagtgaatttattacttcttgaacaattttt 486  Q
     ||||||||  ||||||| ||||||||||| || |||||||||||| |||| ||||||||||||||||||| ||  |||||||| |  |||||||| | |    
T  35177211 actttctaattcttctactcgaggttgtatcccgataaggtcatcagcaaaccctgagaatttatgacccaatgtttttattacctgctgaacaatatct 35177310  T
Q  487 tcaatctcttcaagctcaggcctgaaagaga 517  Q
    | |||||||  || ||| |||||||||||||    
T  35177311 tgaatctctcgaaactctggcctgaaagaga 35177341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 222 - 517
Target Start/End: Original strand, 35183004 - 35183298
Alignment:
Q  222 ccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttcccta 321  Q
    |||||| ||||||||||||| |||||||||||||| ||||  || | ||||||||| |||| | | || || ||||| |   ||||||||||||| |  |    
T  35183004 ccatctttataaattttgcttacattctcaataaaacaacttgcatcaaactgataagagactctatcgtataagacagaagcaagagttgtctttctga 35183103  T
Q  322 ttccacccatccccccgtattcctaaaacgcgaaaaccatcatctgctgaccttaacttcaaaagcctttctaaggcttctacacgaggttgtattccaa 421  Q
    ||||| |||||||||   || |||| | | |||||  ||| |||   |||   ||| |||||||| ||||||||  ||||||| ||||||||||| ||||    
T  35183104 ttccagccatcccccaa-atgcctatagctcgaaattcataatcctttgagtctaatttcaaaaggctttctaattcttctactcgaggttgtatcccaa 35183202  T
Q  422 taaggtcatcaacaaagcctgagaatttatgacccagtgaatttattacttcttgaacaattttttcaatctcttcaagctcaggcctgaaagaga 517  Q
    ||||||||||| |||| ||  ||||||||||||||| || ||||||||| || |||||||| || | |||||||  || ||| |||||||||||||    
T  35183203 taaggtcatcagcaaaccccaagaatttatgacccattgtatttattacctcctgaacaatattcttaatctctcgaaactctggcctgaaagaga 35183298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 251 - 514
Target Start/End: Original strand, 35045210 - 35045472
Alignment:
Q  251 aataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttccctattccacccatccccccgtattcctaaaac 350  Q
    |||||| |||| ||| | |||||||||||||||| |||||||||| || ||  || |||||||||| |||| ||||||||| ||||| |||||| | |||    
T  35045210 aataaaacaacgagcatcaaactgatatgagattctgtcatacaaaacagtagcatgagttgtctttcctactccacccat-cccccatattcccagaac 35045308  T
Q  351 gcgaaaaccatcatctgctgaccttaacttcaaaagcctttctaaggcttctacacgaggttgtattccaataaggtcatcaacaaagcctgagaattta 450  Q
     |||||  |||||||  || | || || || | |||| |||||||  ||||||  |||||||| || |||| |||  ||     ||| ||||||||||||    
T  35045309 tcgaaagtcatcatcctctaagctcaattttagaagcttttctaattcttctatgcgaggttgcatcccaacaagaccactggtaaaccctgagaattta 35045408  T
Q  451 tgacccagtgaatttattacttcttgaacaattttttcaatctcttcaagctcaggcctgaaag 514  Q
    ||| ||| |   ||||| ||| |||||||||||||||||||||||  || ||| ||||||||||    
T  35045409 tgatccaatttttttatcactgcttgaacaattttttcaatctctgtaaactctggcctgaaag 35045472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 35104807 - 35104865
Alignment:
Q  12 attattctacttcctccacaaagcaatttcggatttatatgcaattcctgtaattgctc 70  Q
    ||||||||||| |||| |||||||||||| |||||||||  ||| ||||||||||||||    
T  35104807 attattctactacctcgacaaagcaatttgggatttatagccaactcctgtaattgctc 35104865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 579 - 620
Target Start/End: Original strand, 15370242 - 15370283
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  15370242 tgtttggattgacttatttgagcttatctactggcataagca 15370283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 22878249 - 22878208
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  22878249 tgtttggattgacttatttgagcttatccactgacataagca 22878208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Complemental strand, 18179100 - 18179061
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  18179100 tgtttggattgacttatttgagcttatctactaacataag 18179061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Complemental strand, 27317530 - 27317491
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  27317530 tgtttggattgacttatttgagcttatctaccgacataag 27317491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Complemental strand, 30331902 - 30331863
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    ||||||||||||||||||| |||||| |||||||||||||    
T  30331902 tgtttggattgacttatttcagcttatctactgacataag 30331863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 35044967 - 35045058
Alignment:
Q  11 gattattctacttcctccacaaagcaatttcggatttatatgcaattcctgtaattgctcaatttgatcaatatcatcaagaactacaagga 102  Q
    |||||||||||| |||| |||||| ||||| |||||||||  ||| ||||| |||||||| | ||||| ||| |  ||||||||||| ||||    
T  35044967 gattattctactacctcaacaaagtaatttaggatttatagccaactcctgcaattgctctaattgattaatgttgtcaagaactactagga 35045058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 617
Target Start/End: Original strand, 40837356 - 40837394
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataa 617  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  40837356 tgtttggattggcttatttgagcttatctactgacataa 40837394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 1830190 - 1830149
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||||||||||||||||||| |||  ||||||||||||||    
T  1830190 tgtttggattgacttatttgagtttatttactgacataagca 1830149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 4350841 - 4350800
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||| |||||||||||||  |||||||||||||||    
T  4350841 tgtttggattggcttatttgagcttctctactgacataagca 4350800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 8017585 - 8017544
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||||||||||||||||||| ||| ||| |||||||||||    
T  8017585 tgtttggattgacttatttgaggttatctattgacataagca 8017544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Original strand, 30990358 - 30990399
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||| |||||||||||||| ||||| |||||||||    
T  30990358 tgtttggattggcttatttgagcttatctactaacataagca 30990399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 31982450 - 31982409
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||| ||||||||||| |||||||||||| |||||||||    
T  31982450 tgtttgggttgacttatttaagcttacctactaacataagca 31982409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 617
Target Start/End: Original strand, 40059381 - 40059418
Alignment:
Q  580 gtttggattgacttatttgagcttacctactgacataa 617  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  40059381 gtttggattgacttatttgagtttatctactgacataa 40059418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 617
Target Start/End: Original strand, 40085281 - 40085318
Alignment:
Q  580 gtttggattgacttatttgagcttacctactgacataa 617  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  40085281 gtttggattgacttatttgagtttatctactgacataa 40085318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 40759311 - 40759270
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||| |||||||||||||| ||| |||||||||||    
T  40759311 tgtttggattgccttatttgagcttatctattgacataagca 40759270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 619
Target Start/End: Original strand, 27317018 - 27317066
Alignment:
Q  571 tatgagtgtgtttggattgacttatttgagcttacctactgacataagc 619  Q
    ||||||| ||||||||||||||||||| |||||| ||| || |||||||    
T  27317018 tatgagtctgtttggattgacttattttagcttatctattggcataagc 27317066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 617
Target Start/End: Original strand, 41516949 - 41516981
Alignment:
Q  585 gattgacttatttgagcttacctactgacataa 617  Q
    |||||||||||||||||||||||||| ||||||    
T  41516949 gattgacttatttgagcttacctactcacataa 41516981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 6292643 - 6292602
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagca 6292602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Complemental strand, 41505825 - 41505786
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  41505825 tgtttggattggcttatttgagcttatctactgacataag 41505786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 581 - 620
Target Start/End: Original strand, 51929383 - 51929422
Alignment:
Q  581 tttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  51929383 tttggattgacttttttgagcttatctactgacataagca 51929422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 620
Target Start/End: Original strand, 10199330 - 10199368
Alignment:
Q  582 ttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagca 10199368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 617
Target Start/End: Complemental strand, 15784955 - 15784909
Alignment:
Q  571 tatgagtgtgtttggattgacttatttgagcttacctactgacataa 617  Q
    |||| |||||||||||||||||||||||||||||  ||||| |||||    
T  15784955 tatgggtgtgtttggattgacttatttgagcttatttactgtcataa 15784909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 611
Target Start/End: Original strand, 18403128 - 18403158
Alignment:
Q  581 tttggattgacttatttgagcttacctactg 611  Q
    |||||||||||||||||||||||||||||||    
T  18403128 tttggattgacttatttgagcttacctactg 18403158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 620
Target Start/End: Original strand, 38246974 - 38247024
Alignment:
Q  570 atatgagtgtgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||||| || |||||| |||||||||||||||| |||||||| ||||||    
T  38246974 atatgagtttgcttggatagacttatttgagcttatctactgacgtaagca 38247024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Original strand, 24460320 - 24460361
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||||||||||||| |||| |||||||||| ||||    
T  24460320 tgtttggattgacttatttgaacttatctactgacatgagca 24460361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 32958788 - 32958747
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||| |||||||||||||||||||| |||||| ||||||||    
T  32958788 tgtttagattgacttatttgagcttatctactgtcataagca 32958747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 616
Target Start/End: Original strand, 50644174 - 50644211
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacata 616  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  50644174 tgtttggattgacttatttgagcttatctactaacata 50644211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 611
Target Start/End: Original strand, 28262490 - 28262522
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactg 611  Q
    ||||||||||||||||||||||||||| |||||    
T  28262490 tgtttggattgacttatttgagcttacgtactg 28262522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 617
Target Start/End: Original strand, 29793619 - 29793655
Alignment:
Q  581 tttggattgacttatttgagcttacctactgacataa 617  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  29793619 tttgtattgacttatttgagcttatctactgacataa 29793655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 618
Target Start/End: Complemental strand, 38602478 - 38602439
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  38602478 tgtttggattgacttatttgagcttatctactgacataag 38602439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 620
Target Start/End: Complemental strand, 4560652 - 4560612
Alignment:
Q  580 gtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  4560652 gtttggattgacttatttgagcttatctattgacataagca 4560612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 30251373 - 30251412
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  30251373 tgtttggattggcttatttgagcttatctactgacataag 30251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 617
Target Start/End: Complemental strand, 2606200 - 2606162
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataa 617  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  2606200 tgtttggattgacttattcgagcttatctactgacataa 2606162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 620
Target Start/End: Original strand, 35928644 - 35928690
Alignment:
Q  574 gagtgtgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||| ||||||||||| ||||||| |||||| |||||||||||||||    
T  35928644 gagtctgtttggattgtcttattttagcttatctactgacataagca 35928690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 18331865 - 18331824
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||||||||||||| |||| ||||| |||||||||    
T  18331865 tgtttggattgacttatttgatcttatctactaacataagca 18331824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 32976524 - 32976483
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||  |||||||||||||| |||||||||||||||    
T  32976524 tgtttggattcccttatttgagcttatctactgacataagca 32976483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Original strand, 43368619 - 43368660
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||||||||||||| |||| ||||| |||||||||    
T  43368619 tgtttggattgacttatttgatcttatctactaacataagca 43368660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 27043749 - 27043788
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  27043749 tgtttggattgacttatttgagcttatctactgacataag 27043788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 331
Target Start/End: Complemental strand, 31245185 - 31245085
Alignment:
Q  231 taaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatacaagaccgtcacaagagttgtcttccctattccaccca 330  Q
    |||||||| || |||| |||||||||||| ||||| | ||| ||||  |||||| | ||||||||  | ||  ||||||| |||||||||||||||||||    
T  31245185 taaattttacttacatcctcaataaagcagcaagcatcaaattgattagagattctatcatacaaagcagtagcaagagtagtcttccctattccaccca 31245086  T
Q  331 t 331  Q
    |    
T  31245085 t 31245085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 576 - 619
Target Start/End: Complemental strand, 1133082 - 1133039
Alignment:
Q  576 gtgtgtttggattgacttatttgagcttacctactgacataagc 619  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||    
T  1133082 gtgtgtttgaattgacttatttgagcttatctactgacacaagc 1133039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 17822784 - 17822823
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  17822784 tgtttggattaacttatttgagcttatctactgacataag 17822823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 574 - 617
Target Start/End: Complemental strand, 24193688 - 24193645
Alignment:
Q  574 gagtgtgtttggattgacttatttgagcttacctactgacataa 617  Q
    ||||||||||||||||||||||||||||||| || ||| |||||    
T  24193688 gagtgtgtttggattgacttatttgagcttatctcctggcataa 24193645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 581 - 620
Target Start/End: Original strand, 32420979 - 32421018
Alignment:
Q  581 tttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  32420979 tttggattgacttatttgagcttacctactagcataagca 32421018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 42403942 - 42403981
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  42403942 tgtttggattgacttatttgagcttatcaactgacataag 42403981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 49940086 - 49940125
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  49940086 tgtttggattgacttatttgagcttacctgctaacataag 49940125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 580 - 618
Target Start/End: Original strand, 15173223 - 15173261
Alignment:
Q  580 gtttggattgacttatttgagcttacctactgacataag 618  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  15173223 gtttggattgacttatttgaacttatctactgacataag 15173261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Original strand, 22662170 - 22662211
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||||||||||||||||||| ||| ||||| |||||||||    
T  22662170 tgtttggattgacttatttgagtttatctactaacataagca 22662211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Original strand, 22666649 - 22666690
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||||||||||||||||||| ||| ||||| |||||||||    
T  22666649 tgtttggattgacttatttgagtttatctactaacataagca 22666690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 28259424 - 28259383
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||||| ||||||||||||||||| | |||||||||||||    
T  28259424 tgtttggactgacttatttgagcttatcaactgacataagca 28259383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 31159291 - 31159320
Alignment:
Q  305 aagagttgtcttccctattccacccatccc 334  Q
    ||||||||||||||||||||||||||||||    
T  31159291 aagagttgtcttccctattccacccatccc 31159320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Original strand, 53034718 - 53034759
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||| |||||||||||||||||| ||||||| |||||||    
T  53034718 tgtttggtttgacttatttgagcttatctactgatataagca 53034759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 620
Target Start/End: Complemental strand, 19305080 - 19305036
Alignment:
Q  576 gtgtgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||| |||||||||||||||||||| ||| ||| |||||||||||    
T  19305080 gtgtatttggattgacttatttgagattatctattgacataagca 19305036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 31019843 - 31019871
Alignment:
Q  306 agagttgtcttccctattccacccatccc 334  Q
    |||||||||||||||||||||||||||||    
T  31019843 agagttgtcttccctattccacccatccc 31019871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 31029724 - 31029752
Alignment:
Q  306 agagttgtcttccctattccacccatccc 334  Q
    |||||||||||||||||||||||||||||    
T  31029724 agagttgtcttccctattccacccatccc 31029752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 334
Target Start/End: Complemental strand, 31489703 - 31489675
Alignment:
Q  306 agagttgtcttccctattccacccatccc 334  Q
    |||||||||||||||||||||||||||||    
T  31489703 agagttgtcttccctattccacccatccc 31489675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 580 - 620
Target Start/End: Original strand, 32831438 - 32831478
Alignment:
Q  580 gtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||||||| || ||||||||||| |||||||||||||||    
T  32831438 gtttggattggctcatttgagcttatctactgacataagca 32831478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 579 - 616
Target Start/End: Original strand, 26990144 - 26990181
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacata 616  Q
    |||||||||||||||||||||||||| |||||||||||    
T  26990144 tgtttggattgacttatttgagcttatctactgacata 26990181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 618
Target Start/End: Original strand, 25447159 - 25447203
Alignment:
Q  574 gagtgtgtttggattgacttatttgagcttacctactgacataag 618  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||    
T  25447159 gagtctgtttggattgacttatttgagtttatctactgacataag 25447203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 16072960 - 16072999
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  16072960 tgtttggattgacttatttgagcttatctaatgacataag 16072999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 620
Target Start/End: Original strand, 1288763 - 1288809
Alignment:
Q  574 gagtgtgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||| |||||||||||||||||||||||||| | |||| ||||||||    
T  1288763 gagtttgtttggattgacttatttgagcttatcaactggcataagca 1288809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Original strand, 21872214 - 21872255
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    |||||||||| |||||||||| |||| |||||||||||||||    
T  21872214 tgtttggattaacttatttgatcttatctactgacataagca 21872255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 618
Target Start/End: Complemental strand, 26911740 - 26911703
Alignment:
Q  581 tttggattgacttatttgagcttacctactgacataag 618  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  26911740 tttggattgacttatttgagtttatctactgacataag 26911703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 619
Target Start/End: Original strand, 2081002 - 2081042
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagc 619  Q
    ||||||||||||||||||||| |||| ||| ||||||||||    
T  2081002 tgtttggattgacttatttgaacttatctattgacataagc 2081042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 618
Target Start/End: Original strand, 33405114 - 33405150
Alignment:
Q  582 ttggattgacttatttgagcttacctactgacataag 618  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  33405114 ttggattgacttatttgagtttatctactgacataag 33405150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 619
Target Start/End: Complemental strand, 41155320 - 41155280
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagc 619  Q
    |||||||||||||||||||||||||| ||||| ||| ||||    
T  41155320 tgtttggattgacttatttgagcttaactactaacacaagc 41155280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 20861617 - 20861656
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  20861617 tgtttggattgtcttatttgagcttacctactggcataag 20861656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 21405073 - 21405112
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataag 618  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  21405073 tgtttggattgacttatttgagcttatatactgacataag 21405112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Complemental strand, 4308928 - 4308887
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||| |||||||||| ||| |||||||||||||||    
T  4308928 tgtttggattggcttatttgagtttatctactgacataagca 4308887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 616
Target Start/End: Original strand, 9202904 - 9202941
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacata 616  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  9202904 tgtttggattgacttatttgagcttatctactggcata 9202941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 612
Target Start/End: Original strand, 31776191 - 31776224
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactga 612  Q
    |||||||||||||||||||||||||| |||||||    
T  31776191 tgtttggattgacttatttgagcttatctactga 31776224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 616
Target Start/End: Complemental strand, 33027743 - 33027706
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacata 616  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  33027743 tgtttggattgatttatttgagcttatctactgacata 33027706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 620
Target Start/End: Original strand, 33068521 - 33068562
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagca 620  Q
    ||||||||||| ||||||||| |||| |||||||||||||||    
T  33068521 tgtttggattggcttatttgaacttatctactgacataagca 33068562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 616
Target Start/End: Complemental strand, 33089657 - 33089620
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacata 616  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  33089657 tgtttgggttgacttatttgagcttatctactgacata 33089620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 619
Target Start/End: Complemental strand, 31624411 - 31624371
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactgacataagc 619  Q
    ||||||||||| ||||||||||||||  |||||||||||||    
T  31624411 tgtttggattggcttatttgagcttatatactgacataagc 31624371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 611
Target Start/End: Original strand, 35070573 - 35070605
Alignment:
Q  579 tgtttggattgacttatttgagcttacctactg 611  Q
    ||||||||||| |||||||||||||||||||||    
T  35070573 tgtttggattggcttatttgagcttacctactg 35070605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University