View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8929_low_9 (Length: 617)

Name: NF8929_low_9
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8929_low_9
NF8929_low_9
[»] chr1 (5 HSPs)
chr1 (1-569)||(42516597-42517190)
chr1 (490-547)||(7440807-7440864)
chr1 (490-590)||(6397740-6397840)
chr1 (474-547)||(41941064-41941137)
chr1 (497-590)||(30848923-30849016)
[»] chr5 (4 HSPs)
chr5 (474-581)||(19276886-19276993)
chr5 (507-590)||(19340571-19340654)
chr5 (506-590)||(41715033-41715118)
chr5 (519-590)||(7237151-7237224)
[»] scaffold0154 (1 HSPs)
scaffold0154 (500-553)||(19338-19391)
[»] chr4 (1 HSPs)
chr4 (474-581)||(3284188-3284295)
[»] chr6 (3 HSPs)
chr6 (497-600)||(10384003-10384106)
chr6 (501-582)||(12155933-12156016)
chr6 (471-515)||(22730813-22730857)
[»] chr8 (1 HSPs)
chr8 (474-600)||(24391366-24391492)
[»] chr2 (2 HSPs)
chr2 (509-590)||(34344275-34344355)
chr2 (497-539)||(31395288-31395330)
[»] chr7 (1 HSPs)
chr7 (490-580)||(24447168-24447258)
[»] chr3 (1 HSPs)
chr3 (478-587)||(35223400-35223509)


Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 42516597 - 42517190
Alignment:
Q  1 attcctcacccttaacctgtaaaggagcaatcactattccataaatcagcctctctattattgcaaataattaatcacaataatttgtatatcaatcatt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42516597 attcctcacccttgacctgtaaaggagcaatcactattccataaatcagcctctctattattgcaaataattaatcacaataatttgtatatcaatcatt 42516696  T
Q  101 tttattagttgattcatagaatatgcttgccatgatttgtaataagttgttattatgtgttaccgtacatgacatgattgagctacactgattagaaccg 200  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42516697 tattttagttgattcatagaatatgcttgccatgatttgtaataagttgttattatgtgttaccgtacatgacatgattgagctacactgattagaaccg 42516796  T
Q  201 ttctgattttcttgttcaactctattttctttttgattcatttcttttgcattgttagatgtttcg----------------agctaccaatctattctt 284  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||                ||||||| ||||||||||    
T  42516797 ttctgattttcttgttcaactctattttcttcttgattcatttcttttgcattgttagatgtttcgtaagtgctctcattatagctacc-atctattctt 42516895  T
Q  285 tcatgaaaaaagtaaatcccttgtcattgacgactattacattgtttttgagaaatgtgagactagctaggtactcatgtgtttgcttccactatatatg 384  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||    
T  42516896 tcatgaaaaaagtaaatcccttgtcatt---gactattacattgtttttgagaaatgtgagactagctaggtactcatgtgtttgcttccac----tatg 42516988  T
Q  385 ttgtcattcttagctcacttcaagttggtcattttcataaatttgctcttcaagttttgggtggtcaacattacatatcattgtgtgtt----------- 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  42516989 ttgtcattcttagctcacttcaagttggtcattttcataaatttgctcttcaagttttgggtggtcaacattacatatcattgtgtgttgtgttcatcat 42517088  T
Q  474 ---------gtaatgttgtaatctaaatcatagtagtagtaatatatatattgtttgtaacaccgaaaccctaattcatcacagaaatactaatgaaact 564  Q
             ||| ||||||||||||||||   ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  42517089 ggttcaagggtattgttgtaatctaaatc---gtagtagtactatatatattgtttgtaacaccgaaaccctaattcatcacaggaataccaatgaaact 42517185  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 7440807 - 7440864
Alignment:
Q  490 aatcatagtagtagtaatatatatattgtttgtaacaccgaaaccctaattcatcaca 547  Q
    ||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||    
T  7440807 aatcatagtagtaatattatatatattgtttgtaacaccgaaactctaattcatcaca 7440864  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 490 - 590
Target Start/End: Complemental strand, 6397840 - 6397740
Alignment:
Q  490 aatcatagtagtagtaatatatatattgtttgtaacaccgaaaccctaattcatcacagaaatactaatgaaactatagttgctctatagtcgtagaggt 589  Q
    |||||||||| || || ||||||||||| ||||||||| |||||| || |||||||||| ||||  ||  ||||||||| ||||||||||||  ||||||    
T  6397840 aatcatagtaataatactatatatattgcttgtaacactgaaaccttagttcatcacagtaatagaaacaaaactatagctgctctatagtcacagaggt 6397741  T
Q  590 a 590  Q
    |    
T  6397740 a 6397740  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 474 - 547
Target Start/End: Original strand, 41941064 - 41941137
Alignment:
Q  474 gtaatgttgtaatctaaatcatagtagtagtaatatatatattgtttgtaacaccgaaaccctaattcatcaca 547  Q
    ||||| |||||| || |||| ||||||||||| ||||||||||  ||||||||  |||||||||||||||||||    
T  41941064 gtaatattgtaaactgaatcgtagtagtagtagtatatatattacttgtaacattgaaaccctaattcatcaca 41941137  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 590
Target Start/End: Original strand, 30848923 - 30849016
Alignment:
Q  497 gtagtagtaatatatatattgtttgtaacaccgaaaccctaattcatcacagaaatactaatgaaactatagttgctctatagtcgtagaggta 590  Q
    ||||| ||| ||||||||||||||||| |||  ||||||||||||||||||| |  |  ||  | ||||||||||||||||| ||| |||||||    
T  30848923 gtagtggtactatatatattgtttgtaccacttaaaccctaattcatcacagtagcagaaacaatactatagttgctctataatcgcagaggta 30849016  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 474 - 581
Target Start/End: Original strand, 19276886 - 19276993
Alignment:
Q  474 gtaatgttgtaatctaaatcatagtagtagtaatatatatattgtttgtaacaccgaaaccctaattcatcacagaaatactaatgaaactatagttgct 573  Q
    ||||| ||||||||| |||| ||||| | ||| ||||||||||| | ||||||  |||||||||| ||||||||| ||||| || ||||||||||||| |    
T  19276886 gtaatattgtaatctgaatcgtagtaattgtactatatatattgctagtaacattgaaaccctaaatcatcacagtaatacaaacgaaactatagttgat 19276985  T
Q  574 ctatagtc 581  Q
    ||||||||    
T  19276986 ctatagtc 19276993  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 590
Target Start/End: Original strand, 19340571 - 19340654
Alignment:
Q  507 tatatatattgtttgtaacaccgaaaccctaattcatcacagaaatactaatgaaactatagttgctctatagtcgtagaggta 590  Q
    ||||||||||| |||||||||  |||| ||||||||||| |  ||||  ||||||||||||  ||||||||||||| |||||||    
T  19340571 tatatatattgcttgtaacacttaaactctaattcatcatatcaataaaaatgaaactatatctgctctatagtcgcagaggta 19340654  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 590
Target Start/End: Original strand, 41715033 - 41715118
Alignment:
Q  506 atatatatattgtttgtaacaccgaaaccctaat-tcatcacagaaatactaatgaaactatagttgctctatagtcgtagaggta 590  Q
    |||||||||||| ||||||||| ||| ||||| | ||||||||| ||||  || | |||||||| |||||||| ||||||||||||    
T  41715033 atatatatattgcttgtaacactgaacccctattctcatcacagtaatagaaacggaactatagatgctctatcgtcgtagaggta 41715118  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 590
Target Start/End: Complemental strand, 7237224 - 7237151
Alignment:
Q  519 ttgtaacaccgaaaccctaattc--atcacagaaatactaatgaaactatagttgctctatagtcgtagaggta 590  Q
    |||||||||||||||||||||||  ||||||| ||||  |||| || ||||| |||||||||| || |||||||    
T  7237224 ttgtaacaccgaaaccctaattcttatcacagtaataaaaatggaattatagctgctctatagccgcagaggta 7237151  T

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Target: scaffold0154 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 553
Target Start/End: Original strand, 19338 - 19391
Alignment:
Q  500 gtagtaatatatatattgtttgtaacaccgaaaccctaattcatcacagaaata 553  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||||||||||    
T  19338 gtagtactatatatattgtttgtaacagtgaaaccctaattcatcacagaaata 19391  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 581
Target Start/End: Complemental strand, 3284295 - 3284188
Alignment:
Q  474 gtaatgttgtaatctaaatcatagtagtagtaatatatatattgtttgtaacaccgaaaccctaattcatcacagaaatactaatgaaactatagttgct 573  Q
    ||||| |||||| || |||  ||||||||||||||||||| ||| ||||||| |  ||||||||||||||||||| ||||  || | ||||||| ||| |    
T  3284295 gtaatattgtaaacttaattgtagtagtagtaatatatattttgcttgtaacgctaaaaccctaattcatcacagtaataaaaacggaactataattgtt 3284196  T
Q  574 ctatagtc 581  Q
    ||||||||    
T  3284195 ctatagtc 3284188  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 497 - 600
Target Start/End: Complemental strand, 10384106 - 10384003
Alignment:
Q  497 gtagtagtaatatatatattgtttgtaacaccgaaaccctaattcatcacagaaatactaatgaaactatagttgctctatagtcgtagaggtatgtatc 596  Q
    ||||||||  ||||||||||  || ||| ||  ||||||||||| ||||||| ||||| |||||||||||| ||| |||||| ||| ||||||| | |||    
T  10384106 gtagtagttctatatatattacttataatactaaaaccctaatttatcacagtaatacaaatgaaactataattgttctataatcgcagaggtaagcatc 10384007  T
Q  597 attg 600  Q
    ||||    
T  10384006 attg 10384003  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 582
Target Start/End: Complemental strand, 12156016 - 12155933
Alignment:
Q  501 tagtaatatatatattgtttgtaacaccgaaaccctaattc--atcacagaaatactaatgaaactatagttgctctatagtcg 582  Q
    ||||| ||||||||  ||||||||||| |||| ||||||||  ||||||| ||||  || | |||||||||||| |||||||||    
T  12156016 tagtactatatatacagtttgtaacactgaaatcctaattcttatcacagtaatagaaacggaactatagttgccctatagtcg 12155933  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 471 - 515
Target Start/End: Complemental strand, 22730857 - 22730813
Alignment:
Q  471 gttgtaatgttgtaatctaaatcatagtagtagtaatatatatat 515  Q
    |||||||| |||||| |||||||||| || |||||||||||||||    
T  22730857 gttgtaattttgtaaactaaatcataatattagtaatatatatat 22730813  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 600
Target Start/End: Complemental strand, 24391492 - 24391366
Alignment:
Q  474 gtaatgttgtaatctaaatcatagtagtagtaatatatatattgtttgtaacaccgaaaccctaattcatcacagaaatactaatgaaactatagttgct 573  Q
    ||||| ||||||||| |||| ||  ||||||| | ||||| ||| ||||||||| ||||||   |||||||| |||||| | ||   |||||| |||| |    
T  24391492 gtaattttgtaatctgaatcgtaacagtagtactgtatatgttgcttgtaacactgaaacctgtattcatcatagaaattcaaacagaactatcgttgtt 24391393  T
Q  574 ctatagtcgtagaggtatgtatcattg 600  Q
    ||||| ||||||||||||| |||||||    
T  24391392 ctataatcgtagaggtatgcatcattg 24391366  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 590
Target Start/End: Complemental strand, 34344355 - 34344275
Alignment:
Q  509 tatatattgtttgtaacaccg-aaaccctaattcatcacagaaatactaatgaaactatagttgctctatagtcgtagaggta 590  Q
    ||||||||| ||||||| | | ||||||||||||||||||||||||  |||| |||||| | ||||||||||||  |||||||    
T  34344355 tatatattggttgtaacgctgtaaaccctaattcatcacagaaata--aatgtaactatcggtgctctatagtcacagaggta 34344275  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 539
Target Start/End: Complemental strand, 31395330 - 31395288
Alignment:
Q  497 gtagtagtaatatatatattgtttgtaacaccgaaaccctaat 539  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||    
T  31395330 gtagtagtactatatatattgcttgtaacactgaaaccctaat 31395288  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 580
Target Start/End: Original strand, 24447168 - 24447258
Alignment:
Q  490 aatcatagtagtagtaatatatatattgtttgtaacaccgaaaccctaattcatcacagaaatactaatgaaactatagttgctctatagt 580  Q
    |||| ||| ||||||| ||||| ||||| |||||| || ||||| | |||||||||||| ||||| || |  |||||||||| ||||||||    
T  24447168 aatcgtagcagtagtattatatgtattgcttgtaatactgaaactcaaattcatcacagtaatacaaacgggactatagttgttctatagt 24447258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 587
Target Start/End: Complemental strand, 35223509 - 35223400
Alignment:
Q  478 tgttgtaatctaaatcatagtagtagtaatatatatattgtttgtaacaccgaaaccctaatt--catcacagaaatactaatgaaactatagttgctct 575  Q
    ||||||||||| |||| ||| |||||||||||||||  || || ||||   ||||||||||||  |||| ||||||||  || | |||||||| ||||||    
T  35223509 tgttgtaatctgaatcgtagcagtagtaatatatat--tgcttataactttgaaaccctaattttcatcgcagaaatataaacggaactatagctgctct 35223412  T
Q  576 atagtcgtagag 587  Q
    ||||||| ||||    
T  35223411 atagtcgcagag 35223400  T

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