View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8930_high_3 (Length: 507)

Name: NF8930_high_3
Description: NF8930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8930_high_3
NF8930_high_3
[»] chr7 (16 HSPs)
chr7 (81-481)||(15672037-15672434)
chr7 (199-481)||(15680250-15680528)
chr7 (200-488)||(15666744-15667035)
chr7 (314-488)||(16022935-16023109)
chr7 (314-488)||(14603464-14603638)
chr7 (333-488)||(16170724-16170879)
chr7 (340-488)||(16101053-16101201)
chr7 (1-74)||(37405525-37405598)
chr7 (321-486)||(17847124-17847289)
chr7 (1-40)||(4895667-4895706)
chr7 (1-40)||(28124697-28124736)
chr7 (1-40)||(28126524-28126563)
chr7 (1-40)||(44963246-44963285)
chr7 (2-40)||(20046605-20046643)
chr7 (34-74)||(21631305-21631345)
chr7 (34-74)||(34844169-34844209)
[»] scaffold0289 (1 HSPs)
scaffold0289 (199-481)||(19619-19907)
[»] chr6 (9 HSPs)
chr6 (1-74)||(15868475-15868548)
chr6 (1-74)||(15866663-15866736)
chr6 (1-74)||(33866182-33866255)
chr6 (1-74)||(33869329-33869402)
chr6 (1-40)||(1088762-1088801)
chr6 (1-40)||(19645409-19645448)
chr6 (2-40)||(5376962-5377000)
chr6 (2-40)||(5378817-5378855)
chr6 (33-74)||(24544733-24544774)
[»] chr1 (7 HSPs)
chr1 (1-74)||(3284585-3284658)
chr1 (1-74)||(9310495-9310568)
chr1 (1-74)||(9312112-9312185)
chr1 (1-74)||(3282884-3282957)
chr1 (4-74)||(902162-902232)
chr1 (1-40)||(17449394-17449433)
chr1 (337-409)||(14534755-14534827)
[»] scaffold0251 (1 HSPs)
scaffold0251 (1-74)||(6309-6382)
[»] chr5 (1 HSPs)
chr5 (1-74)||(39787134-39787207)
[»] chr4 (7 HSPs)
chr4 (1-50)||(3529246-3529295)
chr4 (1-40)||(7040444-7040483)
chr4 (1-40)||(23564784-23564823)
chr4 (1-40)||(23566458-23566497)
chr4 (1-40)||(52520684-52520723)
chr4 (1-40)||(54296511-54296550)
chr4 (1-50)||(23985857-23985906)
[»] chr8 (3 HSPs)
chr8 (1-40)||(30224313-30224352)
chr8 (1-40)||(6428823-6428862)
chr8 (1-40)||(25249089-25249128)
[»] chr2 (3 HSPs)
chr2 (1-40)||(29758203-29758242)
chr2 (34-74)||(20957557-20957597)
chr2 (34-74)||(20957729-20957769)
[»] scaffold0057 (1 HSPs)
scaffold0057 (1-40)||(58869-58908)
[»] chr3 (2 HSPs)
chr3 (1-40)||(1140084-1140123)
chr3 (2-40)||(17402891-17402929)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 81 - 481
Target Start/End: Complemental strand, 15672434 - 15672037
Alignment:
Q  81 ttggtttccaataaatatgtgcaacgctactaactacatattgcttccaatcataacaaagtatcttaag-------ccatcaccctatagcttccatgg 173  Q
    ||||||||| |||||||| |||||| ||||||| ||||||| |  |||||||| || |||||||||||||       || ||||||||||||||||||||    
T  15672434 ttggtttcctataaatatctgcaacactactaattacatatag--tccaatcaaaataaagtatcttaagtgctaagccctcaccctatagcttccatgg 15672337  T
Q  174 tgtccatatttccaatgctgcaagtcatgaagtgtgtacacttttggctgtttttctcaatgtacttttgtccactcataactaacaacccttcttcttc 273  Q
    ||||||||||||||| ||| ||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  15672336 tgtccatatttccaacgcttcagaccatgaagtgtgtactcttttggctgtttttctcaatgtacttttgtccactcataactaac------ccttcttc 15672243  T
Q  274 aattgttggtttttccctaacaattgcatctacttcttccactttacaaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaa 373  Q
    ||||||||||||||||  ||||||| ||||| ||||||| |||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||    
T  15672242 aattgttggtttttcc--aacaatttcatctgcttcttctactttacaaagtagagaagcaagtgcgttgttgaagtggaaagcaagtcttgataaccaa 15672145  T
Q  374 agccaagctttgttatcttcatggagtggcaataattcatgcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctca 473  Q
    ||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||  |||||  ||||     
T  15672144 agccaagctttgttatcttcatggaatgacaatatttcatgcaactggttgggaattacgtgtgatgaagattccatgtccgtctcaaatgtaaatctcg 15672045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 199 - 481
Target Start/End: Complemental strand, 15680528 - 15680250
Alignment:
Q  199 catgaagtgtgtacacttttggctgtttttctcaatgtacttttgtccactcataactaacaacccttcttcttcaattgttggtttttccctaacaatt 298  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||   |  |||||||||||||||||||||||||||||||||||||||    
T  15680528 catgaagtgtgtact-ttttggctgtttttctcaatgtacttttgtccactcata---atgaacccttcttcttcaattgttggtttttccctaacaatt 15680433  T
Q  299 gcatctacttcttccactttacaaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatgga 398  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15680432 tcatctacttcttccactttacaaagtagagaagcaagtgctttgttgaagtggaaagcaagtcttgataaccaaagccaagctttgttatcttcatgga 15680333  T
Q  399 gtggcaataattcatgcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatg 481  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| | ||| ||||| ||||||||||||||    
T  15680332 gtggcaataattcatgcagctggttcggaatcacgtgtgatgaagattcgatgtctctgtctaatgtaagtctcacaaatatg 15680250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 200 - 488
Target Start/End: Complemental strand, 15667035 - 15666744
Alignment:
Q  200 atgaagtgtgtacacttttggctgtttttctcaatgtacttttgtccactcataactaacaacc-----cttcttcttcaattgttggtttttccctaac 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||     ||||||||||  | ||||||| |||| | ||    
T  15667035 atgaagtgtgtacacttttggctgtttttctcaatgtacttttgtgcactcataactaac--ccttcttcttcttcttctgtggttggttcttcctttac 15666938  T
Q  295 aattgcatctacttcttccactttacaaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttca 394  Q
     ||| |  |  |||| |||||| | ||||| | |||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||    
T  15666937 tatttctgcagcttcatccactgttcaaagcaaagaagcaagtgctttgttgaagtggaaagcaagtcttgacaaccaaagccaagttttgttatcttca 15666838  T
Q  395 tggagtggcaataattcatgcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatgggattga 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||    
T  15666837 tggagtggcaataattcatgcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctaatgtaagtctcaaaaatatgggattga 15666744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 314 - 488
Target Start/End: Original strand, 16022935 - 16023109
Alignment:
Q  314 actttacaaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatggagtggcaataattcat 413  Q
    |||||||||||||||||| ||||||||||| ||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  16022935 actttacaaagtagagaagcaagtgctttgctgaagtggaaaacaagtcttgacaaccatagccaagctttgttatcttcatggagtggcaataattcat 16023034  T
Q  414 gcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatgggattga 488  Q
    |||||||| |||||||  | ||| ||||||||||||| ||||||||| | |||  ||||||||||||||||||||    
T  16023035 gcaactggcttggaatttcttgtaatgaagattccatttctgtctctaaggtaaatctcacaaatatgggattga 16023109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 314 - 488
Target Start/End: Original strand, 14603464 - 14603638
Alignment:
Q  314 actttacaaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatggagtggcaataattcat 413  Q
    |||||||||||||||||| |||||||||||||||||||||||   |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  14603464 actttacaaagtagagaagcaagtgctttgttgaagtggaaaataagtcttgacaaccatagccaagctttgttatcttcatggagtggcaataattcat 14603563  T
Q  414 gcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatgggattga 488  Q
    |||||||| |||||||  | ||| | ||||||||||| ||||||||| | |||  ||| ||||||||||||||||    
T  14603564 gcaactggcttggaatttcttgtaaagaagattccatttctgtctctaaggtaaatctgacaaatatgggattga 14603638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 333 - 488
Target Start/End: Original strand, 16170724 - 16170879
Alignment:
Q  333 caagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatggagtggcaataattcatgcaactggtttggaatcac 432  Q
    ||||||||||||||||||||||||| |||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||  |    
T  16170724 caagtgctttgttgaagtggaaagcaagtcttgacaaccatagccaaactttgctatcttcatggagtggcaataattcatgcaactggcttggaatttc 16170823  T
Q  433 gtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatgggattga 488  Q
     ||| | ||||||||||| ||||||||| | |||  ||||||||||||||||||||    
T  16170824 ttgtaaagaagattccatttctgtctctaaggtaaatctcacaaatatgggattga 16170879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 340 - 488
Target Start/End: Original strand, 16101053 - 16101201
Alignment:
Q  340 tttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatggagtggcaataattcatgcaactggtttggaatcacgtgtgat 439  Q
    |||||||| ||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| |     
T  16101053 tttgttgatgtggaaagcaagccttgacaatcaaagccaagctttgttatcttcatggagtggcaataattcatgcaactggtttggaatttcttgtaaa 16101152  T
Q  440 gaagattccatgtctgtctctgatgtaggtctcacaaatatgggattga 488  Q
    ||||||||||| ||||||||| | |||  ||||||||||||||||||||    
T  16101153 gaagattccatttctgtctctaaggtaaatctcacaaatatgggattga 16101201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 37405598 - 37405525
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagttactat 74  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||    
T  37405598 ctatatataggaacactattgtactcattcactatcttttgttaaatctagtttactctcctatgagtcactat 37405525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 321 - 486
Target Start/End: Original strand, 17847124 - 17847289
Alignment:
Q  321 aaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatggagtggcaataattcatgcaactg 420  Q
    ||||||||||| ||||| |||||||||| ||||||   |  ||||| |   ||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  17847124 aaagtagagaagcaagttctttgttgaaatggaaaagcaaccttgaaatagaaagccaagctttgttatcttcatggaatggcaacaattcatgcaactg 17847223  T
Q  421 gtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatgggatt 486  Q
    | | ||||| || ||||||||||||  ||| | |||| |  |||||  ||||||||| ||||||||    
T  17847224 gatgggaattacatgtgatgaagataacatatttgtcaccaatgtaaatctcacaaaaatgggatt 17847289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4895667 - 4895706
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  4895667 ctatatataggaacactattgtactcattcatcatctttt 4895706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28124736 - 28124697
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  28124736 ctatatataggaacactattgtactcattcatcatctttt 28124697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28126563 - 28126524
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  28126563 ctatatataggaacactattgtactcattcatcatctttt 28126524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 44963246 - 44963285
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  44963246 ctatatataggaacactattgtactcattcatcatctttt 44963285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 20046643 - 20046605
Alignment:
Q  2 tatatataggaacactattgtattcattcattatctttt 40  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  20046643 tatatataggaacactattgtactcattcaatatctttt 20046605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 21631345 - 21631305
Alignment:
Q  34 atcttttgttaaatctagtttactctactatgagttactat 74  Q
    ||||||| | ||||||||||||||||||||||||| |||||    
T  21631345 atcttttatcaaatctagtttactctactatgagtcactat 21631305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 34844169 - 34844209
Alignment:
Q  34 atcttttgttaaatctagtttactctactatgagttactat 74  Q
    ||||||| | ||||||||||||||||||||||||| |||||    
T  34844169 atcttttatcaaatctagtttactctactatgagtcactat 34844209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 199 - 481
Target Start/End: Complemental strand, 19907 - 19619
Alignment:
Q  199 catgaagtgtgtacacttttggctgtttttctcaatgtacttttgtccactcataactaacaacc--------cttcttcttcaattgttggtttttccc 290  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||  ||        ||||||||||  |  |||||| ||||     
T  19907 catgaagtgtgtacacttttggctgttttcctcaatgtacttttgtacactcataactaac--ccttcttcttcttcttcttctgtgtttggttcttcct 19810  T
Q  291 taacaattgcatctacttcttccactttacaaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatc 390  Q
    | || ||| |  |  |||| |||||| | ||||| | |||| ||||||||||||||||||||| ||| |||||||| |||||||||||| ||||| ||||    
T  19809 ttactatttctgcagcttcatccactgttcaaagcaaagaagcaagtgctttgttgaagtggatagcaagtcttgacaaccaaagccaaactttgctatc 19710  T
Q  391 ttcatggagtggcaataattcatgcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatg 481  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| ||||||| ||| ||||| ||||||||||||||    
T  19709 ttcatggagtggcaataactcatgcaactggtttggaatcacatgtggtgaagattccttgtctgtttctaatgtaagtctcacaaatatg 19619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15868475 - 15868548
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagttactat 74  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  15868475 ctatatataggaacactattgtactcattcattatcttttgttaaatctagtttactctcctatgagtcactat 15868548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15866663 - 15866736
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagttactat 74  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  15866663 ctatatttaggaacactattgtactcattcattatcttttgttaaatctagtttactctcctatgagtcactat 15866736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33866182 - 33866255
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagttactat 74  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| || |||||    
T  33866182 ctatatataggaacactattgtactcattcactatcttttgttaaatctagtttactctcctatgggtcactat 33866255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33869329 - 33869402
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagttactat 74  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||| |||||||| |||||    
T  33869329 ctatatataggaacactattgtacgcattcactatcttttgttaaatctagtttactctcctatgagtcactat 33869402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1088801 - 1088762
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  1088801 ctatatataggaacactattgtactcattcatcatctttt 1088762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19645448 - 19645409
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  19645448 ctatatataagaacactattgtactcattcattatctttt 19645409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 5376962 - 5377000
Alignment:
Q  2 tatatataggaacactattgtattcattcattatctttt 40  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  5376962 tatatataggaacactattgtactcattcaatatctttt 5377000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 5378817 - 5378855
Alignment:
Q  2 tatatataggaacactattgtattcattcattatctttt 40  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  5378817 tatatataggaacactattgtactcattcaatatctttt 5378855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 24544733 - 24544774
Alignment:
Q  33 tatcttttgttaaatctagtttactctactatgagttactat 74  Q
    |||||||| | |||||||||||||||||||||||||| ||||    
T  24544733 tatcttttatcaaatctagtttactctactatgagtttctat 24544774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3284585 - 3284658
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagttactat 74  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||    
T  3284585 ctatatataggaacactattgtactcattcactatcttttgttaaatctagtttactctcctatgagtcactat 3284658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9310495 - 9310568
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagttactat 74  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||    
T  9310495 ctatatataggaacactattgtactcattcattatcttttgttaaatctaatttactctcctatgagtcactat 9310568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9312112 - 9312185
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagttactat 74  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||||    
T  9312112 ctatatataggaacactattgtactcattcattatcttttgttaaatctagtttactctcccatgagtcactat 9312185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3282884 - 3282957
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagttactat 74  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| ||| |||||    
T  3282884 ctatatataggaacactattgtactcattcactatcttttgttaaatctagtttactctcctataagtcactat 3282957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 902162 - 902232
Alignment:
Q  4 tatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagttactat 74  Q
    ||||||||||||||  |||||   |||||||||||||||||||||||||||||||| |||||||| |||||    
T  902162 tatataggaacactcatgtatcatttcattatcttttgttaaatctagtttactctcctatgagtcactat 902232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 17449394 - 17449433
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  17449394 ctatatataggaacactattgtactcattcattatctttt 17449433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 14534827 - 14534755
Alignment:
Q  337 tgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatggagtggcaataat 409  Q
    |||| |||||||||||||||| || ||||| ||||| ||| | |||||| | |||||||||| ||||||||||    
T  14534827 tgctctgttgaagtggaaagcaagccttgacaaccatagcaatgctttgctctcttcatggattggcaataat 14534755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6309 - 6382
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagttactat 74  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||| |||||    
T  6309 ctatatataggaacactattgtactcattcactatcttttgttaaatcaagtttactctcctatgagtcactat 6382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39787207 - 39787134
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagttactat 74  Q
    |||||||||||||||||||| || ||||||| | ||||||||||||||||||||||||| |||| ||| |||||    
T  39787207 ctatatataggaacactattttactcattcactgtcttttgttaaatctagtttactctcctataagtcactat 39787134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3529295 - 3529246
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatcttttgttaaatcta 50  Q
    ||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  3529295 ctatatataggaacactattgtactcattcattatcttttatcaaatcta 3529246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7040444 - 7040483
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  7040444 ctatatataggaacactattgtactcattcattatctttt 7040483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23564823 - 23564784
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  23564823 ctatatataggaacactattgtactcattcattatctttt 23564784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23566497 - 23566458
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  23566497 ctatatataggaacactattgtactcattcattatctttt 23566458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 52520684 - 52520723
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  52520684 ctatatataggaacactattgtactcattcatcatctttt 52520723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 54296511 - 54296550
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  54296511 ctatatataggaacactattgtactcattcatgatctttt 54296550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23985857 - 23985906
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatcttttgttaaatcta 50  Q
    ||||||||||||||||||||||| |||||||  ||||||| | |||||||    
T  23985857 ctatatataggaacactattgtactcattcaccatcttttatcaaatcta 23985906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 30224313 - 30224352
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  30224313 ctatatataggaacactattgtactcattcattatctttt 30224352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6428823 - 6428862
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  6428823 ctatatataggaacactattgtaatcattcatcatctttt 6428862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25249089 - 25249128
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  25249089 ctatatataggaacactattgtactcattcatgatctttt 25249128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29758203 - 29758242
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  29758203 ctatatataggaacactattgtactcattcattatctttt 29758242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 20957557 - 20957597
Alignment:
Q  34 atcttttgttaaatctagtttactctactatgagttactat 74  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  20957557 atcttttgtcaaatctagtttactctactatgagtcactat 20957597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 20957729 - 20957769
Alignment:
Q  34 atcttttgttaaatctagtttactctactatgagttactat 74  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  20957729 atcttttgtcaaatctagtttactctactatgagtcactat 20957769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 58869 - 58908
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  58869 ctatatataggaacactattgtactcattcatcatctttt 58908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1140084 - 1140123
Alignment:
Q  1 ctatatataggaacactattgtattcattcattatctttt 40  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  1140084 ctatatataggaacactattgtactcattcatcatctttt 1140123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 17402929 - 17402891
Alignment:
Q  2 tatatataggaacactattgtattcattcattatctttt 40  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  17402929 tatatataggaacactattgtactcattcaatatctttt 17402891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University