View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8930_low_10 (Length: 484)
Name: NF8930_low_10
Description: NF8930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8930_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Complemental strand, 40084791 - 40084350
Alignment:
| Q |
19 |
cttagaggcagagctaatgttgcttgcttcaagttaaattgtatgtaagaaattcaaagctatttacatatttctttttactgaatgtacgctttacaaa |
118 |
Q |
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| T |
40084791 |
cttagaggcagagctaatgttgcttgcttcaagttaaattgtatgtgagaaattcaaagctatttacaaatt-------actgaatgtacgctttacaaa |
40084699 |
T |
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| Q |
119 |
tctgactctttattaattgttaactaattaaaagttaagtactactagtaaattgctccnnnnnnnnnntgtactactagtaaatcaaatagatgagcaa |
218 |
Q |
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| T |
40084698 |
tctgactctttattaattgttaactaattaaaagctaagtactattagtaaattgctccaaaaaaaaaatgtactactagtaaatcaaatagatgagcaa |
40084599 |
T |
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| Q |
219 |
gaatggtcagcagttataatcatagttaaatattcacatatttcttattcacgggtgaatattatgaacttgaatataaaactaataaaacaaaatgttc |
318 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40084598 |
gaatggtcagcatttataatcatagttaaatattcacatatttcttattcacgggtgaatattatgaacttgaatataaaactaataaaacaaaatgttc |
40084499 |
T |
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| Q |
319 |
tatgttgtattatgaatatatcaatcttcattagtcaacgcttaaagcaaataaatatt-ttttaagagtatgcactcttgagagggtgttagtggggct |
417 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40084498 |
tatgatgtattatgaatatatcaatcttcattagtcaacgcttaaagcaaataaatatttttttaagagtatgcactcttgagagggtgttagtggggct |
40084399 |
T |
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| Q |
418 |
tacttcctggaaaagttagcataggaaagcaagcaattaacatggttga |
466 |
Q |
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| T |
40084398 |
tacttcctggaaaagttagcataggaaagcaagcaattaacatggttga |
40084350 |
T |
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