View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8930_low_11 (Length: 476)
Name: NF8930_low_11
Description: NF8930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8930_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 17 - 470
Target Start/End: Complemental strand, 4031197 - 4030744
Alignment:
| Q |
17 |
cagtggtggggattggcaaccaataacacttattcgcaattgcttcatgattgtttccttcgctatatttatcattttccttaaaaccttgtccatttaa |
116 |
Q |
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| T |
4031197 |
cagtcgtggggattggcaaccaataacacttatttgcaattgcttcatgattgtttccttcgctatatttatcattttccttaaaaccttgtccatttaa |
4031098 |
T |
|
| Q |
117 |
tcaagagtggggacagataccgtagttttattgtgacttgtacaaacttttgttctaattatagaaaatggttttagatgcaaaatgaatgcattaataa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031097 |
tcaagagtggggacagataccgtagttttattgtgaattgtacaaacttttgttctaattatagaaaatggttttagatgcaaaatgaatgcattaataa |
4030998 |
T |
|
| Q |
217 |
agtcacaacagtttgagtttttaatctttgttttcttccttgcaaagattcttgagtactcttggattttcagttcagacaaaaatccgagtttcttact |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4030997 |
agtcacaacagtttgagtttttaatctttgttttcttccttgcaaagattcttgagtactcttggattttcagttcagacaaaaatccgagtttcttact |
4030898 |
T |
|
| Q |
317 |
gaaaaatgatgctttctgtttcatgttttatttcatcttattatagactatactttctttaatatgaagcaatgtgtctcaacaagcttcacaatatctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4030897 |
gaaaaatgatgctttctgtttcatgttttatttcatcttattatagactatactttctttaatatgaagcaatgtgtctcaacaagcttcacaatatctt |
4030798 |
T |
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| Q |
417 |
ttaaattgacctggaccccactataattgtattcatactatttccctctgcttc |
470 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4030797 |
ttaaattgacctggaccccactataattgtattcatactatttccctttgcttc |
4030744 |
T |
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