View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8930_low_12 (Length: 392)
Name: NF8930_low_12
Description: NF8930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8930_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 373
Target Start/End: Original strand, 7556411 - 7556770
Alignment:
| Q |
14 |
gtttggtgttttcgcgagagctttcctcttccaatgaaaatctcttgaaagcaaattaagaataccaacaaacaatatatccttgattcgagaatagttc |
113 |
Q |
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| T |
7556411 |
gtttggtgttttcgcgagagctttcctcttccaatgaaaatctcttgaaagcaaattaagaataccaacaaacaagatatccttgattcgagaatagttc |
7556510 |
T |
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| Q |
114 |
cctctctatgacgttgtcacaatagcgagattgataaattagcagccttgaaaataccattggattattcaacatctccttaacacattaccaacatctt |
213 |
Q |
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| T |
7556511 |
cctctctatgacgttgtcacaatagcgagattgataaattagcagccttgaaaataccattggattattcaacatctccttaacacattaccaacatctt |
7556610 |
T |
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| Q |
214 |
catatattacaatgttaaaactttcattgtagaaggagtattcaatatttttcttctctttccaatggatagaccggacaaaaataatcttcttactctt |
313 |
Q |
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| T |
7556611 |
catatattacaatgttaaaactttcattgtagaaggagtattcaatatttttcttctctttccaatggatagaccggacaaaaataatcttcttactctt |
7556710 |
T |
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| Q |
314 |
ttcactattttctttatttatgggaaagaataaaacatgtttattctttttagtcgataa |
373 |
Q |
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| T |
7556711 |
ttcactattttctttatttatgggaaagaataaaacatgtttattctttttagtcgataa |
7556770 |
T |
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