View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8930_low_17 (Length: 355)

Name: NF8930_low_17
Description: NF8930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8930_low_17
NF8930_low_17
[»] chr7 (17 HSPs)
chr7 (1-346)||(26187135-26187480)
chr7 (105-221)||(26158280-26158395)
chr7 (8-75)||(19102733-19102800)
chr7 (8-75)||(26179977-26180044)
chr7 (4-75)||(26278586-26278657)
chr7 (8-75)||(26298342-26298409)
chr7 (1-75)||(26243287-26243361)
chr7 (8-75)||(26129464-26129531)
chr7 (7-75)||(26192158-26192226)
chr7 (8-75)||(26204779-26204846)
chr7 (8-75)||(26251742-26251809)
chr7 (16-73)||(26156093-26156150)
chr7 (10-75)||(26302705-26302770)
chr7 (8-66)||(26224416-26224474)
chr7 (19-75)||(26121220-26121276)
chr7 (115-187)||(26122185-26122256)
chr7 (105-165)||(26131524-26131584)
[»] chr4 (1 HSPs)
chr4 (6-75)||(44904145-44904214)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 26187135 - 26187480
Alignment:
Q  1 gatgaaatggtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaataaattcagcatcaccaagctgaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26187135 gatgaaatggtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagaaaagaataaattcagcatcaccaagctgaat 26187234  T
Q  101 caactgaatgaaggtattccaaagtgagcctgtattactaaatagaaaccatgcttcaattttcaattctactataacctacaaaagtattcagagtttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||    
T  26187235 caactgaatgaaggtattccaaagtgagcctgtattactaaatagaaaccatgcttcaattttcaattctattataacctacgaaagcattcagagtttt 26187334  T
Q  201 cccacaacacactcagcatcacatcagagttcactgatacttctcattaaaggcatgtttggtgttcgatacaatgtgattacacttggttatgttattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26187335 cccacaacacactcagcatcacatcagagttcactgatacttctcattaaaggcatgtttggtgttcgatacaatgtgattacacttggttatgttattt 26187434  T
Q  301 tataaattcctatcagtgtcaatgtgtcattgtcgtatttgatgtc 346  Q
    | |||||||||||||||||||||||||||||||||| |||| ||||    
T  26187435 tttaaattcctatcagtgtcaatgtgtcattgtcgtgtttggtgtc 26187480  T

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Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 26158280 - 26158395
Alignment:
Q  105 tgaatgaaggtattccaaagtgagcctgtattactaaatagaaaccatgcttcaattttcaattctactataacctacaaaagtattcagagttttccca 204  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  26158280 tgaatgaaggtattccaaagtcagccagtattactaaatagaaaccatgcttcaattttcaattctactataacctacaaaagca-tcagagttttccca 26158378  T
Q  205 caacacactcagcatca 221  Q
    | |||||| ||||||||    
T  26158379 cgacacacccagcatca 26158395  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 19102800 - 19102733
Alignment:
Q  8 tggtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa 75  Q
    |||||| ||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  19102800 tggtgaaaaggggagagatagtgaaggctgtggagattttgatgggaagtggccaagagagcaaagaa 19102733  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 26179977 - 26180044
Alignment:
Q  8 tggtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa 75  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  26179977 tggtgagaagagaagatatagttaaggctgtaaagattttgatgggaagtgaccaagagagcaaagaa 26180044  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 26278586 - 26278657
Alignment:
Q  4 gaaatggtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa 75  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||| | |||||||||||||||||    
T  26278586 gaaatggtgagaagggaagagatagtgaaggctgtagagattttgatgggaattagccaagagagcaaagaa 26278657  T

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Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 26298342 - 26298409
Alignment:
Q  8 tggtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa 75  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||| ||||||||||||||||||    
T  26298342 tggtgagaagggaagagatagagaagactgtgaagattttgatgggaagcggccaagagagcaaagaa 26298409  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26243287 - 26243361
Alignment:
Q  1 gatgaaatggtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa 75  Q
    ||||||||||||||||||||||||||    ||||||||  |||||||||||||||||||||||||||||||||||    
T  26243287 gatgaaatggtgagaagggaagagattacaaaggctgttgagattttgatgggaagtggccaagagagcaaagaa 26243361  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 26129464 - 26129531
Alignment:
Q  8 tggtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa 75  Q
    |||||| ||||||||||||||  ||||||||  |||||||||||||||| ||||||||||||||||||    
T  26129464 tggtgaaaagggaagagatagcgaaggctgtagagattttgatgggaagcggccaagagagcaaagaa 26129531  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 26192158 - 26192226
Alignment:
Q  7 atggtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa 75  Q
    ||||| |||||||||||||| |  ||||||||  ||||||||||||||||||| |||||||||||||||    
T  26192158 atggttagaagggaagagattgcaaaggctgttgagattttgatgggaagtggacaagagagcaaagaa 26192226  T

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Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 26204779 - 26204846
Alignment:
Q  8 tggtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa 75  Q
    ||||||||||||| |||||||| ||||||||  |||| |||||||||| |||||||| ||||||||||    
T  26204779 tggtgagaagggaggagatagtgaaggctgttgagatattgatgggaaatggccaagtgagcaaagaa 26204846  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 26251742 - 26251809
Alignment:
Q  8 tggtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa 75  Q
    |||||||||||||||| || |  | |||||| |||||||||||||||||| |||||||||||||||||    
T  26251742 tggtgagaagggaagaaattgcaatggctgttaagattttgatgggaagttgccaagagagcaaagaa 26251809  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 26156093 - 26156150
Alignment:
Q  16 agggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaag 73  Q
    |||||||||||||  ||||||||  |||||||||||||||||| ||||||||||||||    
T  26156093 agggaagagatagcgaaggctgtagagattttgatgggaagtgaccaagagagcaaag 26156150  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 26302705 - 26302770
Alignment:
Q  10 gtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa 75  Q
    ||||||||||||||||| |  ||||| ||  ||||||||||||||| |||||||||||||||||||    
T  26302705 gtgagaagggaagagattgcaaaggccgttgagattttgatgggaaatggccaagagagcaaagaa 26302770  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 26224416 - 26224474
Alignment:
Q  8 tggtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagag 66  Q
    ||||||||||||| |||||||| ||||||||  |||| |||||||||||||| ||||||    
T  26224416 tggtgagaagggaggagatagtgaaggctgttgagatattgatgggaagtggtcaagag 26224474  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 26121220 - 26121276
Alignment:
Q  19 gaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa 75  Q
    ||||||||||  ||||| ||  ||||||| |||||||||||||||||||||||||||    
T  26121220 gaagagatagcgaaggccgtagagattttaatgggaagtggccaagagagcaaagaa 26121276  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 26122185 - 26122256
Alignment:
Q  115 tattccaaagtgagcctgtattactaaatagaaaccatgcttcaattttcaattctactataacctacaaaag 187  Q
    ||||||||||||| || ||| ||||||| ||||||||||||  |||||||| ||||| ||||| |||||||||    
T  26122185 tattccaaagtgatccagtaatactaaaaagaaaccatgctagaattttcacttcta-tataagctacaaaag 26122256  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 26131524 - 26131584
Alignment:
Q  105 tgaatgaaggtattccaaagtgagcctgtattactaaatagaaaccatgcttcaattttca 165  Q
    |||| |||||||||||||||||| || ||| ||||||| ||||| ||||||  ||||||||    
T  26131524 tgaacgaaggtattccaaagtgatccagtactactaaaaagaaatcatgctagaattttca 26131584  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 44904145 - 44904214
Alignment:
Q  6 aatggtgagaagggaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa 75  Q
    |||||| |||||||||||||| |  ||||||| | |||||||| |||||| ||| ||||| |||||||||    
T  44904145 aatggttagaagggaagagattgcaaaggctgcggagattttgttgggaaatggtcaagacagcaaagaa 44904214  T

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