View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8930_low_20 (Length: 320)
Name: NF8930_low_20
Description: NF8930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8930_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 45334036 - 45333743
Alignment:
| Q |
11 |
gtgttgaaatttaaaatattgttgtgaggaggagaacaatgatgatttttgatatgttatatatggatacgttttattagcaaatggacatgtccgaatg |
110 |
Q |
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| T |
45334036 |
gtgttgaaatttaaaatattgttgtgaagaggagaacaatgatgatttttgatatgttatatatggatacgttttattagcaaatggacatgtccgaatg |
45333937 |
T |
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| Q |
111 |
atgttgtttcttggaactcaactctacgagaatactacaaaactacatgtcctttttgtgaagtttcttgtgctatttagttgatacatgaatgaaacat |
210 |
Q |
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| T |
45333936 |
atgttgtttcttggaactcaactctacgagaatactacaaaactacatgtcctttttgtgaagtttcttgtgctatttagttgatacatgaatgaaacat |
45333837 |
T |
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| Q |
211 |
aatcaacctggttttgttttcctagtatatgaaccttaaattttgctctaactcagggagctagaaatcaagctaataatatgttcctcattgg |
304 |
Q |
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| T |
45333836 |
aatcaacctggttttgttttcctagtatatgaaccttaaattttgctctaactcagggagctagaaatcaagcttataatatgttcctcattgg |
45333743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 146 - 304
Target Start/End: Original strand, 11271316 - 11271473
Alignment:
| Q |
146 |
tacaaaactacatgtcctttttgtgaagtttcttgtgctatttagttgatacatgaatgaaacataatcaacctggttttgttttcctagtatatgaacc |
245 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |
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| T |
11271316 |
tacaaaactacgtgtcctttttgtgaagtttcttgcgctatttagttgatacatgaatgaaacgtaatcaacctggttttattttcct-ctatatgaacc |
11271414 |
T |
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| Q |
246 |
ttaaattttgctctaactcagggagctagaaatcaagctaataatatgttcctcattgg |
304 |
Q |
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| T |
11271415 |
ttaatttttgatctaactcagggagctagaaatcaagcttatgatatgttcctcattgg |
11271473 |
T |
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