View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8930_low_23 (Length: 256)
Name: NF8930_low_23
Description: NF8930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8930_low_23 |
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| [»] chr5 (7 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 1580634 - 1580874
Alignment:
| Q |
16 |
ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag |
115 |
Q |
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| T |
1580634 |
ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagcagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag |
1580733 |
T |
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| Q |
116 |
catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaata |
215 |
Q |
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| T |
1580734 |
catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccaaaaaaacaagataaggaaaaattgtcatcacctccgccaata |
1580833 |
T |
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| Q |
216 |
ttgcctattgatgtcgagatcaagatcaaagagttgaatgg |
256 |
Q |
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| T |
1580834 |
ttgcctattgatgtcgagatcaagatcaaagagttgaatgg |
1580874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 1604181 - 1603941
Alignment:
| Q |
16 |
ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag |
115 |
Q |
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| T |
1604181 |
ttcgccaagaaacaaaattgcctcttaatattccacaaagcacaatgaaaggagaagcagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag |
1604082 |
T |
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| Q |
116 |
catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaata |
215 |
Q |
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| T |
1604081 |
catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggtaccaaaaaaacaagataaggaaaaattgtcatcacctccgccaata |
1603982 |
T |
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| Q |
216 |
ttgcctattgatgtcgagatcaagatcaaagagttgaatgg |
256 |
Q |
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| T |
1603981 |
ttgcctattgatgtcgagatcaagatcaaagagttgaatgg |
1603941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 256
Target Start/End: Complemental strand, 1591048 - 1590849
Alignment:
| Q |
57 |
acaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtagcatggctgata-aggcgaaaagaagagtgaaaccaaagagc |
155 |
Q |
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| T |
1591048 |
acaatggaaggagatgtcgtgaataaaaagaaaaggtgtcgctcaagtgatgaaggtagca-gcatgttttatgcggaaagaagtgttaaaccaaagacc |
1590950 |
T |
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| Q |
156 |
acgaagaagatggtaccnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatg |
255 |
Q |
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| T |
1590949 |
acgaagaagatcaaaccaaaaaaacatgataaggaaaatttgtcatcacctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatg |
1590850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 256
Target Start/End: Original strand, 1587191 - 1587374
Alignment:
| Q |
73 |
tagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtagca---tggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatggt |
169 |
Q |
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| T |
1587191 |
tagtgaataaaaagaaaaggtgtcgctcaagtgatgaaggtagcagcatgtcttatgtgg---aaagaagagttaaaccaaagaccacgaagaagatcaa |
1587287 |
T |
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| Q |
170 |
accnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatgg |
256 |
Q |
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| T |
1587288 |
accaaaaaaacatgataaggaaaatttgtcatcacctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatgg |
1587374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 1586786 - 1586815
Alignment:
| Q |
1 |
tggaaggagatcatgttcgccaagaaacaa |
30 |
Q |
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| T |
1586786 |
tggaaggagatcatgttcgccaagaaacaa |
1586815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 1586817 - 1586845
Alignment:
| Q |
2 |
ggaaggagatcatgttcgccaagaaacaa |
30 |
Q |
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| T |
1586817 |
ggaaggagatcatgttcgccaagaaacaa |
1586845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 1586931 - 1586959
Alignment:
| Q |
2 |
ggaaggagatcatgttcgccaagaaacaa |
30 |
Q |
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| T |
1586931 |
ggaaggagatcatgttcgccaagaaacaa |
1586959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 256
Target Start/End: Complemental strand, 19270616 - 19270432
Alignment:
| Q |
72 |
gtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtag---catggctgataaggcgaaaagaagagtgaaaccaaagagcacgaagaagatgg |
168 |
Q |
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| T |
19270616 |
gtagtgaataaaaagaaaaggtgttgctcaagtgatgaaggtagaagcatgtctcac---gcagaaagaagagtgaaaccaaagagcacgaagaagatga |
19270520 |
T |
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| Q |
169 |
taccnnnnnnncaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatgg |
256 |
Q |
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||| |||||||||||||| |||||||| ||||| ||||||||||||||| | | |||| ||||||||||||||||||||| |
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| T |
19270519 |
aaccaaaaaaacaagataaggaaaatttgtcatctcctccaccaatattgcctattcacatagagaacaagatcaaagagttgaatgg |
19270432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 39616349 - 39616233
Alignment:
| Q |
45 |
attccacaaagcacaatgaaaggagaagtagtgaataagaagaaaaggtgtcgctcaagtgatgaaggtagcatggctgataaggcgaaaagaagagtga |
144 |
Q |
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| T |
39616349 |
attccacaaaacacagtggaaggagaagtagcgaataccaagaaaaggtgtcgcccatgtgatgaagttagcatgtcttat---gcggaaagaagaacga |
39616253 |
T |
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| Q |
145 |
aaccaaagagcacgaagaag |
164 |
Q |
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| T |
39616252 |
aaccaaagaccacgaagaag |
39616233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 39616178 - 39616102
Alignment:
| Q |
180 |
caagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcgagatcaagatcaaagagttgaatgg |
256 |
Q |
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| T |
39616178 |
caagataagaaaaatttggctttacctccgccaatattacctattaatgtcaagaacaagatcaaggagttgaatgg |
39616102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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