View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8930_low_28 (Length: 236)
Name: NF8930_low_28
Description: NF8930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8930_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 44901413 - 44901211
Alignment:
| Q |
17 |
agaaacacgaagaattatataggaactcaccaatgcgtttttgtggatgattaagtgcaatgcgcttgtagacgctgcgccattttggtctagcaaagtg |
116 |
Q |
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| T |
44901413 |
agaaacacgaagaattatataggaactcaccaatgcgtttttgtggatgattaagtgcaatgcgcttgtagacgctgcaccattttggtctagcaaagtg |
44901314 |
T |
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| Q |
117 |
agacttgacgggtgttccagtcaagatatccacaccagttttagcatggtttagtgattgaagcatagcaataagagtagattgagcatcaccgtcttca |
216 |
Q |
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| T |
44901313 |
agacttgacgggtgttccagtcaagatatccacaccatttttagcatggtttagtgattgaagcatagcaataagagcagattgagcatcaccgtcttca |
44901214 |
T |
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| Q |
217 |
tat |
219 |
Q |
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||| |
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| T |
44901213 |
tat |
44901211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 39 - 218
Target Start/End: Complemental strand, 44918141 - 44917962
Alignment:
| Q |
39 |
gaactcaccaatgcgtttttgtggatgattaagtgcaatgcgcttgtagacgctgcgccattttggtctagcaaagtgagacttgacgggtgttccagtc |
138 |
Q |
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| T |
44918141 |
gaactcaccaacgcgtgtttgtggatgattaagtgcaatgcgcttgtagacactacgccaattaggtttagcaaagtgagacttgacgcgtgttccagag |
44918042 |
T |
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| Q |
139 |
aagatatccacaccagttttagcatggtttagtgattgaagcatagcaataagagtagattgagcatcaccgtcttcata |
218 |
Q |
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| T |
44918041 |
acgatatccacaccatttttagcatgattaagtgattggagcatagcaataagagcagagcgagcatcaccctcttcata |
44917962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 35 - 219
Target Start/End: Complemental strand, 44892742 - 44892558
Alignment:
| Q |
35 |
ataggaactcaccaatgcgtttttgtggatgattaagtgcaatgcgcttgtagacgctgcgccattttggtctagcaaagtgagacttgacgggtgttcc |
134 |
Q |
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| T |
44892742 |
ataggaactcaccaatgcgtttttgtggatgattatttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggtgttcc |
44892643 |
T |
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| Q |
135 |
agtcaagatatccacaccagttttagcatggtttagtgattgaagcatagcaataagagtagattgagcatcaccgtcttcatat |
219 |
Q |
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| T |
44892642 |
atttaagatatccaaaccttctttagcatggtttagtgattgaaggacagtaacaagagcagagcgagcatcaccgtcttcatat |
44892558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 39985780 - 39985716
Alignment:
| Q |
61 |
ggatgattaagtgcaatgcgcttgtagacgctgcgccattttggtctagcaaagtgagacttgac |
125 |
Q |
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| T |
39985780 |
ggatgattaagtgcaatgcgtttgtagacagtgcgccaattgggtttagcaaaatgagacatgac |
39985716 |
T |
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