View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8930_low_30 (Length: 235)
Name: NF8930_low_30
Description: NF8930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8930_low_30 |
 | |
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| [»] chr3 (10 HSPs) |
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|
| [»] chr5 (7 HSPs) |
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| [»] chr4 (8 HSPs) |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0113 (1 HSPs) |
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| [»] chr6 (5 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr7 (12 HSPs) |
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| [»] scaffold0222 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0566 (1 HSPs) |
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| [»] scaffold0012 (3 HSPs) |
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| [»] scaffold0220 (1 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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| [»] scaffold0090 (1 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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| [»] scaffold0841 (1 HSPs) |
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| [»] scaffold0485 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 13090220 - 13090439
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13090220 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcacc |
13090319 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctattta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
13090320 |
actcatattgggaattgtgagaagggccatggattctaaaaaaaaaacatgctagtgagggtttctaagtatagatagtagtttccctcaatcctattta |
13090419 |
T |
|
| Q |
216 |
tccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13090420 |
tccctttgttcacatttacc |
13090439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 9362370 - 9362587
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9362370 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatttgaattaggtagaataatcaagaaattagcattattgactctcc |
9362469 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctattta |
215 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
9362470 |
actcatattggggattgtgagaagggccatggattct--aaaaaaaacatggtagtgagggtttctaagtatagatagtagtttccctcaatcctattta |
9362567 |
T |
|
| Q |
216 |
tccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
9362568 |
tccctttgttcacatttacc |
9362587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 13096511 - 13096288
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
13096511 |
acctgtgggttagtgtcaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagaattattgactctcc |
13096412 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattct----nnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatccta |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||| |||||||| |
|
|
| T |
13096411 |
actcatgttgggaattgtgagaagggccatggattctaaaaaaaaaaaaaacatggtagtgagggtttctaagtataggtagtagttaccctcaatccta |
13096312 |
T |
|
| Q |
212 |
tttatccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
13096311 |
tttatccctttgttcacatttacc |
13096288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 20562150 - 20561930
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
20562150 |
acctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattgactc |
20562051 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctat |
212 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
20562050 |
tccactcatattggtaattgtgagaagggccatgaattct--aaaaaaaacatggtagtgagggtttctaagtctagatagtagtttccctcaatcctat |
20561953 |
T |
|
| Q |
213 |
ttatccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
20561952 |
ttatccctttattcacatttacc |
20561930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 20564458 - 20564238
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
20564458 |
acctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattgactc |
20564359 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctat |
212 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
20564358 |
tccactcatattggtaattgtgagaagggccatgaattct--aaaaaaaacatggtagtgagggtttctaagtctagatagtagtttccctcaatcctat |
20564261 |
T |
|
| Q |
213 |
ttatccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
20564260 |
ttatccctttattcacatttacc |
20564238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 20559840 - 20559622
Alignment:
| Q |
18 |
ctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgc |
114 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |
|
|
| T |
20559840 |
ctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattgactctc |
20559741 |
T |
|
| Q |
115 |
cactcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctattt |
214 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||||| |
|
|
| T |
20559740 |
cactcatattggtaattgtgagaagggccatgaattct--aaaaaaaacatggtagtgagggtttctaagtctagatagtagtttccctcaatcctattt |
20559643 |
T |
|
| Q |
215 |
atccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
20559642 |
atccctttattcacatttacc |
20559622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 20153578 - 20153468
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
20153578 |
acctgtaggttagtgccaacataaacaaagttttctaccacctccagattaggaatatctgaa---ggtagaataatcaagaaattagcagcattgactc |
20153482 |
T |
|
| Q |
113 |
gccactcatattgg |
126 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20153481 |
tccactcatattgg |
20153468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 6813663 - 6813540
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||| || ||| || |
|
|
| T |
6813663 |
acctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattc |
6813564 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgag |
136 |
Q |
| |
|
||| |||||||| ||||||||| |
|
|
| T |
6813563 |
tccatgcatattggtaattgtgag |
6813540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 15024501 - 15024365
Alignment:
| Q |
19 |
tgtgggttagtgccaacataa---aagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
||||| ||||| ||||||||| || ||||| ||||||| ||||||||| || |||| ||||||||||||||| || ||||||| |||| | || || |
|
|
| T |
15024501 |
tgtggattagtaccaacataatgcaaattttccaccacctccggattagttatgtctggattaggtagaataataaaacaattagctctattaattctcc |
15024402 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattct |
152 |
Q |
| |
|
| ||||||||| ||||||||| |||| ||||| |||| |
|
|
| T |
15024401 |
attcatattggtaattgtgagtagggtcatgggttct |
15024365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 12777917 - 12777996
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa |
92 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||| || ||||||||| || |||||||||||||||||||| |
|
|
| T |
12777917 |
acctgtgggttagtaccaacataaagcaaattttccaccacctccgaattagtaatgtccgaattaggtagaataatcaa |
12777996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 23602053 - 23602270
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23602053 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
23602152 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctattta |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
23602153 |
actcatattgggaattgtgagaaaggccatggattct--aaaaaaaacatggtagtgagggtttctaagtatagatagtagtttccctcaatcctattta |
23602250 |
T |
|
| Q |
216 |
tccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
23602251 |
tccctttgttcacatttacc |
23602270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 24939331 - 24939117
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24939331 |
acctgtgggttagtgccaacataaaagttttctaccaccttcgaattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
24939232 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctattta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
24939231 |
actcatattgggaattgtgagaagggccatggattct-aaaaaaaaacatggtagtgagggttt----ttatagatagtagtttccctcaatcctattta |
24939137 |
T |
|
| Q |
216 |
tccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
24939136 |
tccctttgttcacatttacc |
24939117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 24218627 - 24218415
Alignment:
| Q |
19 |
tgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgccact |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24218627 |
tgtgggttagtgccaacataatagttttctaccatctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactctccact |
24218528 |
T |
|
| Q |
119 |
catattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctatttatcc |
218 |
Q |
| |
|
|||||||| || ||||| ||||||||||| |||| ||||||||||||||||||||| || |||||||| |||||| ||||||||||||||| |
|
|
| T |
24218527 |
catattggtaa-tgtgaaaagggccatggtttct---aaaaaaacatggtagtgagggtttctaagtaaagatagtaatttccctcaatcctatttatcc |
24218432 |
T |
|
| Q |
219 |
ctttgttcacatttacc |
235 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
24218431 |
ctttgttcacatttacc |
24218415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 20446258 - 20446478
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20446258 |
acctgtgggttagtgccaacataaaccaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
20446357 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctat |
212 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| |||| ||||||||||||||| ||||| | ||| |||||||||||| ||||| ||| |
|
|
| T |
20446358 |
tccactcatattggtaattgtgagaagggctatgagttct--aataaaaacatggtagtgagggtatctaagtctaggtagtagtttccctcaatcatat |
20446455 |
T |
|
| Q |
213 |
ttatccctttgttcacatttacc |
235 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
20446456 |
ttatctctttgttcacatttacc |
20446478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 18487476 - 18487699
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18487476 |
acctgtgggttagtgccaacataaaccaagttttctaccacctcaggattaataatatctgaattaggtagaataatcaagaaattagcattattgactc |
18487575 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattct-nnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatccta |
211 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||||||| ||| ||||||||||||||||| | |||||||||||||| | |||||||| |
|
|
| T |
18487576 |
tccactcatattggtaattgttataagggccatggattctaaaaaaaaaaacatcgtagtgagggtttctaagtctagatagtagtttctctcaatccta |
18487675 |
T |
|
| Q |
212 |
tttatccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
18487676 |
tttatcccttcgttcacatttacc |
18487699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 21282323 - 21282542
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaag-aaattagcattattgact |
111 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||||| || ||||| ||||||||| |
|
|
| T |
21282323 |
acctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattgact |
21282422 |
T |
|
| Q |
112 |
cgccactcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatccta |
211 |
Q |
| |
|
| ||||||||||||| |||||||||||||| ||||||||| || ||||||||||| ||||| | |||||||||||||||| |||||| | |
|
|
| T |
21282423 |
ctccactcatattggtaattgtgagaagggttatggattctaaaaaaa----atagtagtgagggtctctaagtctagatagtagtttccctcaatccaa |
21282518 |
T |
|
| Q |
212 |
tttatccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
21282519 |
tttatccctttgttcacatttacc |
21282542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 23712120 - 23712207
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattag |
100 |
Q |
| |
|
||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
23712120 |
acctgtgggttaggaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaaaaattag |
23712207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 10629548 - 10629331
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10629548 |
acctgtgggttagtgccaacataaaagttttctaccgccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactctcc |
10629449 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctattta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
10629448 |
actcatattgggaattgtgagaagggccatggattct--aaaaaaaacatggtagtgagggtttctaagtatagatagtagtttccctcaatcctattta |
10629351 |
T |
|
| Q |
216 |
tccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10629350 |
tccctttgttcacatttacc |
10629331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 45240270 - 45240492
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaatt-agcattattgact |
111 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
45240270 |
acctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattgact |
45240369 |
T |
|
| Q |
112 |
cgccactcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatccta |
211 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
45240370 |
ctccactcatattggtaattgtgagaagggccatgaattctaaaaaaaaaacatggtagtgagggtttctaagtctagatagtagtttccc-caatccta |
45240468 |
T |
|
| Q |
212 |
tttatccctttgttcacatttacc |
235 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
45240469 |
tttatccctttgttcacttttacc |
45240492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 11498026 - 11498247
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
11498026 |
acctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatttgaattaggtagaataatcaagcaattaacataattgactc |
11498125 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctat |
212 |
Q |
| |
|
||||||||||||| |||||| ||||||| |||| ||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
11498126 |
tccactcatattggtaattgttagaagggtcatgaattct-aaaaaaaaacatggtagtgagggtttctaagtctagatagtagtttccctcaatcctat |
11498224 |
T |
|
| Q |
213 |
ttatccctttgttcacatttacc |
235 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
11498225 |
ttatcccttctttcacatttacc |
11498247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 18290821 - 18290682
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |
|
|
| T |
18290821 |
acctgtgggttagtgccaacataaaccaagttttctatcacctccggattagtaatatctgaattaggtagaataatcaataaatttgcattattgaatt |
18290722 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattct |
152 |
Q |
| |
|
||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
18290721 |
tccactcatattggtaattgttagaagggccgtggattct |
18290682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 15349257 - 15349391
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||| || ||| || |
|
|
| T |
15349257 |
acctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattc |
15349356 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatgg |
147 |
Q |
| |
|
||| ||||||||| ||||||||| |||| ||||| |
|
|
| T |
15349357 |
tccattcatattggtaattgtgagtagggtcatgg |
15349391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 11918141 - 11918234
Alignment:
| Q |
43 |
ttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgccactcatattgggaattgtgaga |
137 |
Q |
| |
|
||||| ||||||||||| ||||| || || | |||||||||||||||||| |||||||| |||||||| ||||||||||||| |||||||||| |
|
|
| T |
11918141 |
ttttccaccaccttcgggttagttatgtccggattaggtagaataatcaa-aaattagccctattgactttccactcatattggtaattgtgaga |
11918234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 42711188 - 42711267
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa |
92 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||| |
|
|
| T |
42711188 |
acctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
42711267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 14687185 - 14687324
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||| ||| |||||||||||| || ||||||||||| |||||||| ||||||| || | | || |
|
|
| T |
14687185 |
acctgtgggttagtaccaacataaagcaaattttccaccgcctccggattagtaatgtccgaattaggtagcataatcaaacaattagctctaataattc |
14687284 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattct |
152 |
Q |
| |
|
||| | ||||||| ||||||||| |||| ||||| |||| |
|
|
| T |
14687285 |
tccatttatattggtaattgtgagtagggtcatgggttct |
14687324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 17619542 - 17619322
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17619542 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactctcc |
17619443 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattct-nnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctattt |
214 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
17619442 |
actcatattggaaattgtgagaagggccatgaattctataaaaaaaaacatggtagtgagggtttctaagtatagatagtagtttccctcaatcctattt |
17619343 |
T |
|
| Q |
215 |
atccctttgttcacatttacc |
235 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
17619342 |
atccttttgttcacatttacc |
17619322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 21855189 - 21855402
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
21855189 |
acctgtaggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactctcc |
21855288 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctattta |
215 |
Q |
| |
|
||||||||||| |||||||||||||| |||| |||| ||||||||||||||| ||||| | ||| |||||||||||| ||||| |||||| |
|
|
| T |
21855289 |
actcatattggtaattgtgagaagggttatgggttct--aataaaaacatggtagtgagggtatctaagtctaggtagtagtttccctcaatcatattta |
21855386 |
T |
|
| Q |
216 |
tccctttgttcacatt |
231 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21855387 |
tccctttgttcacatt |
21855402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 20040482 - 20040703
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
20040482 |
acctgtgggttagtgccaacataaacctagttttctaccacctctggattagtaatatctgaattaggtagaataatcaagaaattagtagtattgactc |
20040581 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctat |
212 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
20040582 |
tccactcatattggtaattgtgagaagggccatgaattct-aaaaaaaaacatggtagtgagggtttctaagtctagatagtagtttccctcaatcctat |
20040680 |
T |
|
| Q |
213 |
ttatccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
20040681 |
ttatccctttattcacatttacc |
20040703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 20001099 - 20000965
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||| | |||||||||| || |||||||||||||||||||| ||||||| || ||| || |
|
|
| T |
20001099 |
acctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattc |
20001000 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatgg |
147 |
Q |
| |
|
||| ||||||||| ||||||||| |||| ||||| |
|
|
| T |
20000999 |
tccattcatattggtaattgtgagtagggtcatgg |
20000965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 38046 - 38272
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38046 |
acctgtgggttagtgccaacataaaagttttctaccaccttagaattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
38145 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattct-------nnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatc |
208 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38146 |
actcatattggaaattgtgagaagggccatggattctaaaaataaaaaaaaaaacatggtagtgagggtttctaaatatagatagtagtttccctcaatc |
38245 |
T |
|
| Q |
209 |
ctatttatccctttgttcacatttacc |
235 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38246 |
ctatttatccctttgttcacatttacc |
38272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 18852818 - 18852601
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||| || ||||||| |||| || |
|
|
| T |
18852818 |
acctgtgggttagtgccaacataaaaattttctaccatctccggattagtaatatctgaattaggtagaataatcaagaaa-taacattatttactctcc |
18852720 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctattta |
215 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
18852719 |
actcatattggtaattgtgagaagggccatggattct-tgaaaaaaacatggtagtgagggtttctaagtaaagatagtagtttccctcaatcctattta |
18852621 |
T |
|
| Q |
216 |
tccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18852620 |
tccctttgttcacatttacc |
18852601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 18188982 - 18189199
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18188982 |
acctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtattatccgaattaggtagaataatcaagcaattagcattattgactc |
18189081 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctat |
212 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||| || ||||||||||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
18189082 |
tccactcatattggtaattgtgagaagggtcatggattctaaaaaaa----atagtagtgagggtttctaagtctagatagtagtttccctcaatcctat |
18189177 |
T |
|
| Q |
213 |
ttatccctttgttcacatttac |
234 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
18189178 |
ttatccctttgttcacatttac |
18189199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 17818317 - 17818097
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17818317 |
acctgtgggttagtgccaacataaaccaagttttctaccacctacggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
17818218 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctat |
212 |
Q |
| |
|
||||||||||||| ||||||||||||| | ||| |||| ||||||||||||||| ||||| | ||| |||||||||||| ||||| ||| |
|
|
| T |
17818217 |
tccactcatattggtaattgtgagaaggactatgagttct--aataaaaacatggtagtgagggtatctaagtctaggtagtagtttccctcaatcatat |
17818120 |
T |
|
| Q |
213 |
ttatccctttgttcacatttacc |
235 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
17818119 |
ttatccctttgttcacatttacc |
17818097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 22062924 - 22063012
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagc |
101 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
22062924 |
acctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagc |
22063012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 23519168 - 23519298
Alignment:
| Q |
20 |
gtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcca |
116 |
Q |
| |
|
|||||||||| |||||||||| | ||||| |||| || ||||||||| || || ||| ||||||||||||||| ||||||| |||| ||| || |
|
|
| T |
23519168 |
gtgggttagttccaacataaagcaaattttccaccatctccggattagttatgtccaaataaggtagaataatcaaacaattagccctatttactttccg |
23519267 |
T |
|
| Q |
117 |
ctcatattgggaattgtgagaagggccatgg |
147 |
Q |
| |
|
| |||||||| | |||||||||||| ||||| |
|
|
| T |
23519268 |
cacatattggtagttgtgagaagggtcatgg |
23519298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 21785856 - 21786076
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
21785856 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaaaaatcaagaaattagcattattgactctcc |
21785955 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattct-nnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctattt |
214 |
Q |
| |
|
|||||| |||| | |||| |||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
21785956 |
actcatgttggtacttgttagaagggccatgaattctaaaaaaaaaaacatcgtagtgagggtttctaaatctagatagtagtttccctcaatcctattt |
21786055 |
T |
|
| Q |
215 |
atccctttgttcacatttacc |
235 |
Q |
| |
|
|||| || ||||||||||||| |
|
|
| T |
21786056 |
atccattcgttcacatttacc |
21786076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 22626465 - 22626661
Alignment:
| Q |
39 |
aaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgccactcatattgggaattgtgagaa |
138 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
22626465 |
aaagttttctaccaccaccggattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaa |
22626564 |
T |
|
| Q |
139 |
gggccatggattct-nnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctatttatccctttgttcacatttacc |
235 |
Q |
| |
|
||| |||||||||| ||||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
22626565 |
ggg-catggattctaagaaaaaaaacatggtagtgagggtatctaagtctagatagtagtttccctcaatcctatttatccctttgttcatatttacc |
22626661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 27045668 - 27045534
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||| || ||| || |
|
|
| T |
27045668 |
acctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattc |
27045569 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatgg |
147 |
Q |
| |
|
||| |||||||| ||||||||| |||| ||||| |
|
|
| T |
27045568 |
tccatgcatattggtaattgtgagtagggtcatgg |
27045534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 23513870 - 23513647
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23513870 |
acctgtgggttagtgccaacataaacaaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagtaattagcattattgactc |
23513771 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattct-nnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatccta |
211 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
23513770 |
tccactcatataggtaattgtgagaagggccatggattctaaaaaaaaaaacatggtagtgagggtttctaagtctagatagtagtttccctcaatccta |
23513671 |
T |
|
| Q |
212 |
tttatccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
23513670 |
tttatccctttgttcacatttacc |
23513647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 13741222 - 13740999
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||| || ||||||||| || ||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
13741222 |
acctgtggattagtgccaacataaacatagttttctaccacctccgaattagtaatgtccgaattaggtagaataatcaagcaattatcattattgactc |
13741123 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattct-nnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatccta |
211 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||||| ||||| || |
|
|
| T |
13741122 |
tccactcatattggtaattgtgagaagggccatggattataagaaaaaaaacatggtagtgagggtttctaagtctagatagtagtttccctcaatctta |
13741023 |
T |
|
| Q |
212 |
tttatccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
13741022 |
tttatcccgttgttcacatttacc |
13740999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 12565800 - 12565582
Alignment:
| Q |
20 |
gtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcca |
116 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
12565800 |
gtgggttagtaccaacataaaccaagttttctaccacctccgaattagtaatatctgaattaggttaaataatcaagaaattagcattattgactctcca |
12565701 |
T |
|
| Q |
117 |
ctcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctatttat |
216 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| |||| |||||||||||||||| | ||||||||||||||| ||||| ||||||| |
|
|
| T |
12565700 |
ctcatattggtaattgttagaagggccatggattccaaaaaaaaaacatgctagtgagggtttctaagtcaagatagtagtttccctcaatcgtatttat |
12565601 |
T |
|
| Q |
217 |
ccctttgttcacatttacc |
235 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
12565600 |
cccttcgttcacatttacc |
12565582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 10439751 - 10439890
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10439751 |
acctgtgggttagtgccaacataaaccaagttttctaccaccttcagcttagtaatatctgaattaggtagaataatcaagaaattatcattattgactc |
10439850 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattct |
152 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| |||| |
|
|
| T |
10439851 |
tccactcatattggtaattgtgagaagggctatgggttct |
10439890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 5395941 - 5395802
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5395941 |
acctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattgacgc |
5395842 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattct |
152 |
Q |
| |
|
|||||||| |||| |||||| ||||||| | |||||||| |
|
|
| T |
5395841 |
tccactcattttggtaattgttagaagggtcgtggattct |
5395802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 540172 - 540306
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||| ||| ||| || |
|
|
| T |
540172 |
acctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctttaatgattc |
540271 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatgg |
147 |
Q |
| |
|
|| ||||||||| ||||||||| |||| ||||| |
|
|
| T |
540272 |
tcctttcatattggtaattgtgagtagggtcatgg |
540306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 4311525 - 4311389
Alignment:
| Q |
19 |
tgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
||||||||||| ||||| |||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||| || | | || || |
|
|
| T |
4311525 |
tgtgggttagtaccaacgtaaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaataattctcc |
4311426 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattct |
152 |
Q |
| |
|
| ||||||||| ||||||||| |||||||||| |||| |
|
|
| T |
4311425 |
attcatattggtaattgtgagtagggccatgggttct |
4311389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 16327180 - 16327314
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || ||||||||||||||| |||| ||||||| || | | || |
|
|
| T |
16327180 |
acctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaatagtcaaacaattagctctaataattc |
16327279 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatgg |
147 |
Q |
| |
|
||| ||||||||| ||||||||| |||| ||||| |
|
|
| T |
16327280 |
tccattcatattggtaattgtgagtagggtcatgg |
16327314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 9729555 - 9729476
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa |
92 |
Q |
| |
|
|||||||| ||||| |||||||||| | ||||| ||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9729555 |
acctgtggattagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaataatcaa |
9729476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 9581703 - 9581624
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa |
92 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||| | |||||||||| || |||||||||||||||||||| |
|
|
| T |
9581703 |
acctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaa |
9581624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 8783505 - 8783588
Alignment:
| Q |
19 |
tgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaatta |
99 |
Q |
| |
|
||||||||||| |||||||||| | ||||| ||||||| ||||||||| || || |||||||| ||||||||||| |||||| |
|
|
| T |
8783505 |
tgtgggttagtaccaacataaagcaaattttccaccacctccggattagttatgtccgaattagggagaataatcaaaaaatta |
8783588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 10449697 - 10449733
Alignment:
| Q |
199 |
tcccacaatcctatttatccctttgttcacatttacc |
235 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
10449697 |
tccctcaatcatatttatccctttgttcacatttacc |
10449733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0222 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0222
Description:
Target: scaffold0222; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 18629 - 18407
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18629 |
acctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
18530 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctat |
212 |
Q |
| |
|
||||||||||||| |||||| | ||||||||| | |||| ||||||||||||||||||| | | ||||||| |||||||| ||||||||| |
|
|
| T |
18529 |
tccactcatattggtaattgttataagggccatcggttctaaaaaaaaaacatggtagtgagggtttctgagtctagataggagtttccctcaatcctat |
18430 |
T |
|
| Q |
213 |
ttatccctttgttcacatttacc |
235 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
18429 |
ttatcccttcgttcacatttacc |
18407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 24501131 - 24500910
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24501131 |
acctgtgggttagtgccaacataaatcaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagcaattagcattattgactc |
24501032 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctat |
212 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
24501031 |
tccactaatattggtaattgtgagaagggccatggattct-aagaaaaaacatggtagtgagggtttctaagtctagatagtagtttccctcaatcctat |
24500933 |
T |
|
| Q |
213 |
ttatccctttgttcacatttacc |
235 |
Q |
| |
|
| ||||||||||||| ||||||| |
|
|
| T |
24500932 |
tgatccctttgttcatatttacc |
24500910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 25339522 - 25339652
Alignment:
| Q |
19 |
tgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
|||| ||||||||||||||||| | ||||| ||||||| | ||||||| || || | |||||||||||||||||| ||||||| ||||||| || |
|
|
| T |
25339522 |
tgtgagttagtgccaacataaagaaaattttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagccctattgaccttcc |
25339621 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatg |
146 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |
|
|
| T |
25339622 |
actcatattggtaattgtgagttgggccatg |
25339652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 1408 - 1188
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1408 |
acctgtgggttagtgccaacataaaccaagttttctaccacctccagattagtaatatctgaattaggtagaataatcaagaaattagcataattgactc |
1309 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctat |
212 |
Q |
| |
|
||||||||||||| |||||| ||||||| |||| ||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
1308 |
tccactcatattggtaattgttagaagggtcatgaattct--aaaaaaaacatggtagtgagggtttctaagtctagatagtagtttccctcaatcctat |
1211 |
T |
|
| Q |
213 |
ttatccctttgttcacatttacc |
235 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
1210 |
ttatcccttctttcacatttacc |
1188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 12857 - 13074
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||| | |||||||||||||||||||| | |
|
|
| T |
12857 |
acctgtgggttagtgccaacataaaagttttctaccacctccagattagtaatatctaatttaggtagaataataaggaaattagcattattgactctct |
12956 |
T |
|
| Q |
116 |
actcatattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctattta |
215 |
Q |
| |
|
||||||||||| || |||||||| || |||||||||| ||||||||||||||||||||| |||||||| | | ||||| |||||||||||| |
|
|
| T |
12957 |
actcatattggtaactgtgagaaaggacatggattct--aaaaaaaacatggtagtgagggtttctaagtatagatattcgcttccctcaatcctattta |
13054 |
T |
|
| Q |
216 |
tccctttgttcacatttacc |
235 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13055 |
tccctttgttcacatttacc |
13074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 8751 - 8965
Alignment:
| Q |
19 |
tgtgggttagtgccaacataaaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgccact |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||| | |||||||||||||||||||| | ||| |
|
|
| T |
8751 |
tgtgggttagtgccaacataaaagttttctaccacctccagattagtaatatctaatttaggtagaataataaggaaattagcattattgactctctact |
8850 |
T |
|
| Q |
119 |
catattgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctatttatcc |
218 |
Q |
| |
|
|||||||| || |||||||| || |||||||||| ||||||||||||||||||||| |||||||| | | ||||| ||||||||||||||| |
|
|
| T |
8851 |
catattggtaactgtgagaaaggacatggattct--aaaaaaaacatggtagtgagggtttctaagtatagatattcgcttccctcaatcctatttatcc |
8948 |
T |
|
| Q |
219 |
ctttgttcacatttacc |
235 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8949 |
ctttgttcacatttacc |
8965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 8687 - 8719
Alignment:
| Q |
18 |
ctgtgggttagtgccaacataaaagttttctac |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8687 |
ctgtgggttagtgccaacataaaagttttctac |
8719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0220 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0220
Description:
Target: scaffold0220; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 27 - 235
Target Start/End: Original strand, 11737 - 11944
Alignment:
| Q |
27 |
agtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgccactcatat |
123 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
11737 |
agtgccaacataaaccaagttttctaccacctccagattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatat |
11836 |
T |
|
| Q |
124 |
tgggaattgtgagaagggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctatttatccctttg |
223 |
Q |
| |
|
||| |||||||||||||| |||||||||| || ||||||||||||||||| | |||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
11837 |
tggtaattgtgagaagggtcatggattctaaaaaaa----atagtagtgagggtttctaagtctagatagtagtttccctcaatcctatctatccctttg |
11932 |
T |
|
| Q |
224 |
ttcacatttacc |
235 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11933 |
ttcacatttacc |
11944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 17141 - 16950
Alignment:
| Q |
40 |
aagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgccactcatattgggaattgtgagaag |
139 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
17141 |
aagttttctaccacctctgtattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaag |
17042 |
T |
|
| Q |
140 |
ggccatggattctnnnnnnnnnncatggtagtgagggtttctaaatatagatagtagtttcccacaatcctatttatccctttgttcacatttacc |
235 |
Q |
| |
|
|| |||||||||| || | ||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17041 |
ggtcatggattctgaaaaaa----atagcagtgagggtttctaagtctagatagtagtttccctcaatcctatttatccctttgttcacatttacc |
16950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 29562 - 29428
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||||||||| |||||||||||| || ||||||||||||||||||| ||||||| || ||| || |
|
|
| T |
29562 |
acctgtgggttagtaccaacataaagcaaattttctaccacctccggattagtaatgtccgaattaggtagaataatcatacaattagctctaatgattc |
29463 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatgg |
147 |
Q |
| |
|
||| ||||||||| ||||||||| |||| ||||| |
|
|
| T |
29462 |
tccattcatattggtaattgtgagtagggtcatgg |
29428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 51966 - 52100
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactc |
112 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||| |||| ||||||| || ||||||||||||||| |||| ||||||| || | | || |
|
|
| T |
51966 |
acctgtgggttagtaccaacataaagcaaattttccaccacctccggaatagtaatgtccgaattaggtagaatagtcaaacaattagctctaataattc |
52065 |
T |
|
| Q |
113 |
gccactcatattgggaattgtgagaagggccatgg |
147 |
Q |
| |
|
||| ||||||||| ||||||||| |||| ||||| |
|
|
| T |
52066 |
tccattcatattggtaattgtgagtagggtcatgg |
52100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0841 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0841
Description:
Target: scaffold0841; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 5013 - 5063
Alignment:
| Q |
102 |
attattgactcgccactcatattgggaattgtgagaagggccatggattct |
152 |
Q |
| |
|
||||||||||| |||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
5013 |
attattgactctccactcatatcggggattgtgagaagggccatggattct |
5063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0485 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0485
Description:
Target: scaffold0485; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 11317 - 11441
Alignment:
| Q |
16 |
acctgtgggttagtgccaacataaa----agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgact |
111 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||| | ||||||| || || | |||||||||||||||||| ||||||| || | | | |
|
|
| T |
11317 |
acctgtgggttagtaccaacataaagcaaatttttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagctctaataatt |
11416 |
T |
|
| Q |
112 |
cgccactcatattgggaattgtgag |
136 |
Q |
| |
|
| ||||||||||||| ||||||||| |
|
|
| T |
11417 |
ctccactcatattggtaattgtgag |
11441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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