View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8930_low_4 (Length: 593)
Name: NF8930_low_4
Description: NF8930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8930_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 41717367 - 41717947
Alignment:
| Q |
1 |
tttcacacacaatctttccatcacgagaagccaacaccaccccaccagagctgaattttccacaaatataatcaggtatgctgaaactgatatcgaatat |
100 |
Q |
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| T |
41717367 |
tttcacacacaatctttccatcacgagaagccaacaccaccccaccagagctgaattttccacaaatataatcaggtatgctgaaactgatatcgaatat |
41717466 |
T |
|
| Q |
101 |
taaagcagctacaaaactaatcaaatgtttagatggtcatcagagaaggctttctcgtgtctcaatgtcaaatcaacacgaaaatacaaaagcaacaaac |
200 |
Q |
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| T |
41717467 |
taaagcagctacacaactaatcaaatgtttagatggtcatcagagaaggctttctcatgtctcaatgtcaaatcaacacgaaaatacaaaagcaacaaac |
41717566 |
T |
|
| Q |
201 |
tgtagagttgtttgaccttgtggtactgtcgtgatttattgagtctcccaaacccataataaaacaactttagctagtatgctcagtcaactaaaaacat |
300 |
Q |
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| T |
41717567 |
tgtagagttgtttgaccttgtggtactgtcgtgatttattgagtctcccaaacccataataaaacaactttagctagtatgctcagtcaactaaaaacat |
41717666 |
T |
|
| Q |
301 |
ggtaaccttaggtttgaaactcttgattaattttgaccagaatgtgtaactaatcaagaaaaaggtacagcatgagtaagaagcaggaccctgattaaca |
400 |
Q |
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| T |
41717667 |
ggtaaccttaggtttgaaactcttgattaattttgaccagaatgtgtaactaatcaagaaaaaggtacagcatgagtaagaagcaggacc---attaaca |
41717763 |
T |
|
| Q |
401 |
gatccatacagttgcttaatatttaaatagaagtctataacatgaactttaccagtagggttcgtgagtattgtgatgcttgggtgcaggggggagatag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41717764 |
gatccatacagttgcttaatatttaaatagaagtctgtaacatgaactttaccagtaaggttcgtgagtattgtgatgcttgggtgcagggggaagatag |
41717863 |
T |
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| Q |
501 |
acactgtggtcaacaatgatctctggtggataaacacctgctttttcagcatactcctgtgcagctgcatccagcacaggttct |
584 |
Q |
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| T |
41717864 |
acactgtggtcaacaatgatctctggtggataaacacctgctttttcagcatactcctgtgcagctgcatccagcacatgttct |
41717947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 2420900 - 2420846
Alignment:
| Q |
1 |
tttcacacacaatctttccatcacgagaagccaacaccaccccaccagagctgaa |
55 |
Q |
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||||| ||||||||||||||||| |||||||||| ||||| || ||||||||||| |
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| T |
2420900 |
tttcaaacacaatctttccatcatgagaagccaataccacacctccagagctgaa |
2420846 |
T |
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