View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8930_low_7 (Length: 546)

Name: NF8930_low_7
Description: NF8930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8930_low_7
NF8930_low_7
[»] chr2 (5 HSPs)
chr2 (202-320)||(20699427-20699541)
chr2 (398-489)||(20700314-20700405)
chr2 (227-285)||(25698507-25698565)
chr2 (212-285)||(20975558-20975631)
chr2 (220-285)||(20980604-20980669)
[»] chr4 (2 HSPs)
chr4 (304-346)||(46300801-46300843)
chr4 (494-529)||(46300676-46300711)
[»] chr8 (1 HSPs)
chr8 (211-279)||(29390292-29390360)
[»] scaffold0649 (1 HSPs)
scaffold0649 (209-320)||(5407-5514)
[»] chr7 (1 HSPs)
chr7 (207-284)||(660839-660916)
[»] chr3 (1 HSPs)
chr3 (207-282)||(3625737-3625812)
[»] chr6 (1 HSPs)
chr6 (207-276)||(17369673-17369742)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 202 - 320
Target Start/End: Original strand, 20699427 - 20699541
Alignment:
Q  202 gatatagattttgataactaaatttaaacaatttagtccaagacgcttcaactcgaaattctctcatttgccacataataaaataaataattttccttgg 301  Q
    |||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |    |||| |||||||||||    
T  20699427 gatatatattttgataattaaatttaaacagtttagtccaagacgcttcaactcgaaattctctcatctgccatataaca----aaattattttccttgg 20699522  T
Q  302 aacaatgactaaaacaaag 320  Q
    ||||||| |||||||||||    
T  20699523 aacaatggctaaaacaaag 20699541  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 398 - 489
Target Start/End: Original strand, 20700314 - 20700405
Alignment:
Q  398 gatttcacgtcaagaaaggagaggacttcggcgatgagatcatccggaagggtcactggcgaaggagggttgatttcacgccgagacttaga 489  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||| ||| | || |||||||||| |||||||||| ||||| |||||||    
T  20700314 gatttcacgtcaagaaaggccaggacttccgcgatgagatcatccgggaggattaccggcgaaggagagttgatttcatgccgaaacttaga 20700405  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 25698565 - 25698507
Alignment:
Q  227 aaacaatttagtccaagacgcttcaactcgaaattctctcatttgccacataataaaat 285  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||||| |||| |||||    
T  25698565 aaacaatttagtccaagagtcttcaactccaaattctctcatttgccatataacaaaat 25698507  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 20975631 - 20975558
Alignment:
Q  212 ttgataactaaatttaaacaatttagtccaagacgcttcaactcgaaattctctcatttgccacataataaaat 285  Q
    |||||| |||||||||||||||| | |||||||  ||||||||| |||||| ||||||||||| |||| |||||    
T  20975631 ttgatacctaaatttaaacaattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaat 20975558  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 20980669 - 20980604
Alignment:
Q  220 taaatttaaacaatttagtccaagacgcttcaactcgaaattctctcatttgccacataataaaat 285  Q
    |||||||||  || |||||||||||| ||||||||| ||||||| |||||| ||| |||| |||||    
T  20980669 taaatttaaggaacttagtccaagactcttcaactctaaattctgtcattttccatataacaaaat 20980604  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 346
Target Start/End: Complemental strand, 46300843 - 46300801
Alignment:
Q  304 caatgactaaaacaaagctgaaggcagtgaattgaggacgttg 346  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46300843 caatgactaaaacaaagctgaaggcagtgaattgaggacgttg 46300801  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 494 - 529
Target Start/End: Complemental strand, 46300711 - 46300676
Alignment:
Q  494 ctgtgtgccgccgtggagttgatgattacttgatat 529  Q
    ||||||||||||||||||||||||||||||||||||    
T  46300711 ctgtgtgccgccgtggagttgatgattacttgatat 46300676  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 29390360 - 29390292
Alignment:
Q  211 tttgataactaaatttaaacaatttagtccaagacgcttcaactcgaaattctctcatttgccacataa 279  Q
    ||||||||||||||| |||||||||||| |||||  ||||||||| |||||| ||||| ||||| ||||    
T  29390360 tttgataactaaattgaaacaatttagttcaagattcttcaactccaaattccctcatctgccatataa 29390292  T

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Target: scaffold0649 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 5514 - 5407
Alignment:
Q  209 attttgataactaaatttaaacaatttagtccaagacgcttcaactcgaaattctctcatttgccacataataaaataaataattttccttggaacaatg 308  Q
    ||||||||||||||||||||  ||  ||||||||||| ||||||||| ||||| | |||| ||||| |||| |    |||| ||||||||| ||| ||||    
T  5514 attttgataactaaatttaaggaacatagtccaagactcttcaactctaaattttttcatctgccatataaca----aaatcattttccttagaataatg 5419  T
Q  309 actaaaacaaag 320  Q
    || |||||||||    
T  5418 acaaaaacaaag 5407  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 660839 - 660916
Alignment:
Q  207 agattttgataactaaatttaaacaatttagtccaagacgcttcaactcgaaattctctcatttgccacataataaaa 284  Q
    ||||| |||||||||| |||||  |||| |||||||||| ||||||||||||||||  |||| ||||| |||| ||||    
T  660839 agattatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 3625812 - 3625737
Alignment:
Q  207 agattttgataactaaatttaaacaatttagtccaagacgcttcaactcgaaattctctcatttgccacataataa 282  Q
    |||||||||||||||| |||||  |||| |||||||||| ||||||| | |||||   |||||||||| |||||||    
T  3625812 agattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataataa 3625737  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 17369742 - 17369673
Alignment:
Q  207 agattttgataactaaatttaaacaatttagtccaagacgcttcaactcgaaattctctcatttgccaca 276  Q
    ||||| |||||||||| |||||  |||| |||||||||  ||||||||| ||||||  ||||||||||||    
T  17369742 agattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccaca 17369673  T

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