View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8931_high_15 (Length: 268)
Name: NF8931_high_15
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_high_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 7352357 - 7352614
Alignment:
| Q |
12 |
ttggtgttcaaatctaccagataagtgttaatg-ttatttattgggttttacaacaaatgaactcaattcatcaatttttaaaagtttttatgtgtcgtg |
110 |
Q |
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| T |
7352357 |
ttggtgttcaaatctaccagataagtgttcatggttatttgttgggttttacagcaaatgaactcaattcatcaatttttagaagtttttatgtgtcgtg |
7352456 |
T |
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| Q |
111 |
gactacagaaactgtcggtgcaacctcaaccacacaaaatcacctgtaacgacgcttaactgtcgttggcacctacgacaattaactgtcactgcgttat |
210 |
Q |
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| T |
7352457 |
gactacagaaattgtcggtgcaacctcaaccacacaaaatcacatgtaacgacgcttaactgtcattggcacctacgacaattaactatcgttgcgttat |
7352556 |
T |
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| Q |
211 |
ggtaacaggagcaaaacctgagtttacaaaaagtcatgttttttccactgaatcattc |
268 |
Q |
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| T |
7352557 |
ggtaacaagggcaaaacctgagtttacaaaaagtcatgttttttccactgaatcattc |
7352614 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 26255615 - 26255662
Alignment:
| Q |
83 |
caatttttaaaagtttttatgtgtcgtggactacagaaactgtcggtg |
130 |
Q |
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| T |
26255615 |
caatttataaaagattttgtgtgtcgtggactacagaaactatcggtg |
26255662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 27842720 - 27842604
Alignment:
| Q |
30 |
agataagtgttaatg-ttatttattgggttttacaacaaatgaactcaattcatcaatttttaaaagtttttatgtgtcgtggactacagaaactgtcgg |
128 |
Q |
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| T |
27842720 |
agataagtgttcatggttctttgttgtgttttacaacaaatgaa-tcaa-acatcaatttatacaagtttatgtgcgtcgtggaccacataatttgtcgt |
27842623 |
T |
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| Q |
129 |
tgcaacctcaaccacacaa |
147 |
Q |
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| T |
27842622 |
tgcaacctgaaccacacaa |
27842604 |
T |
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