View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8931_low_10 (Length: 558)
Name: NF8931_low_10
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 9 - 558
Target Start/End: Original strand, 32830567 - 32831116
Alignment:
| Q |
9 |
agcacagacagcaaccacacacaaagcaatagcccacatgggcttttcatctgaattgtgaagtaaagtacatcccattccaagcccaaataaggacact |
108 |
Q |
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| T |
32830567 |
agcacaaacagcaaccacacacaaagcaatagcccacatgggcttttcatctgaattgtgaagtaaagtacatcccattccaagcccaaataaggacact |
32830666 |
T |
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| Q |
109 |
gccatacctgatgagcccaacaacagcatgggccttcttccaaatttgtctaataccaatgctgaaaatagaacaaaacatgtctttgctattcccataa |
208 |
Q |
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| T |
32830667 |
gccatacctgatgagcccaacaacaacatgggccttcttccaaatctgtctaataccaatgctgaaaatagaacaaaacatgtctttgctattcccataa |
32830766 |
T |
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| Q |
209 |
tgattgtgacaccaaaaagttgcttctcacctttaactccagcttctctaaacacttcaggactgtaatatataacagcatcatttccagaagcttgcat |
308 |
Q |
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| T |
32830767 |
tgattgtgacaccaaaaagttgcttctcacctttaactccagcttctctaaacacttcaggactgtaatatataacagcatcatttccagacgcttgcat |
32830866 |
T |
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| Q |
309 |
gaaaaaattaataccaactgcagctataagaatccttaatacaggacgtgtaggtgtaattagcaattctttccataccccttgtccatgcctagaagaa |
408 |
Q |
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| T |
32830867 |
gaaaaaattaataccaactgctgctataagaatccttagtacaggacgtgtcggtgtaattagcaattctttccataccccttgtccatgcctagaagaa |
32830966 |
T |
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| Q |
409 |
gtactagaaattgtagcagcttgtgaaatttctgaaagtctaaattcagcttcacctttattcgacgatgttctaatcaaaacttgtttcgcttcttcaa |
508 |
Q |
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| T |
32830967 |
gtactagaatttgtagcagcttgtgaaatttctgaaagtctaaattcagcttcacctttattcgacgatgttctaatcaaaacttgtttcgcttcttcaa |
32831066 |
T |
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| Q |
509 |
gcttacctgttggaaaagcaacacaaacagaaaaacacatgatatttggt |
558 |
Q |
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| T |
32831067 |
gtttacctgttggaaaagcaacacaaacagaaaaacacatgatatttggt |
32831116 |
T |
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Back To:
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 43547138 - 43547086
Alignment:
| Q |
273 |
gtaatatataacagcatcatttccagaagcttgcatgaaaaaattaataccaa |
325 |
Q |
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| T |
43547138 |
gtaatatataacggcatcgtttccagatgcttgcatgaagaaattaatcccaa |
43547086 |
T |
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