View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8931_low_11 (Length: 549)
Name: NF8931_low_11
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 253 - 418
Target Start/End: Complemental strand, 23892860 - 23892695
Alignment:
| Q |
253 |
ctaagcttaacatagctcatgagaattgtgattaatgcagtgttggaggaatttccaaacagtaaactaatattttttgggtctcaaccctctgggtcta |
352 |
Q |
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| T |
23892860 |
ctaagcttaacatagctcatgagaattgtgattaatgcagtgttggaggaatttccaaacagtaaactaatattttttgggtctcaaccctccgggtcta |
23892761 |
T |
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| Q |
353 |
ggggaagcgagtcttggtaccagagttcggtcaagaggtaagtaatgtctggccaacaattgttta |
418 |
Q |
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| T |
23892760 |
ggggaagcgagtcttggtaccagagttcggtcaagaggtaagtaatgtctggccaacaattgttta |
23892695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 416 - 534
Target Start/End: Complemental strand, 23892672 - 23892554
Alignment:
| Q |
416 |
ttaagtatagctcattaaatatttgattcaacataaagagctcaggatttgactttcaaatttggttatttgtttttaactttgtaatttctgtattttg |
515 |
Q |
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| T |
23892672 |
ttaagtatagctcattaactatttgattcaacataaagagctcaggatttgactttcaaatttgttgatttgttttttactttgtattttctgtattttg |
23892573 |
T |
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| Q |
516 |
tgattgaatatgcagttga |
534 |
Q |
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| T |
23892572 |
tgattgaatatgcagttga |
23892554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 23893070 - 23892923
Alignment:
| Q |
44 |
gttcagaagacattgatgcagcattgatcatggtcatagaaaatcttgatgtcgcgaaacaaattgcggtggcagaac---nnnnnnnnnnnnnnnnatg |
140 |
Q |
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| T |
23893070 |
gttcagaagacattgatgcagcattgatcatggtcatagaaaatcttgatgtcgcgaaacaaatcgcggtggcagaactttttttttttttttttttatg |
23892971 |
T |
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| Q |
141 |
aattgaagaagtgtgcagctctttcttgaatcaaagtcaatcatgata |
188 |
Q |
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| T |
23892970 |
aattgaagaagtgtgcagctctttcttgaatcaaagtcaatcatgata |
23892923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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