View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8931_low_13 (Length: 531)

Name: NF8931_low_13
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8931_low_13
NF8931_low_13
[»] chr1 (4 HSPs)
chr1 (22-531)||(30629224-30629739)
chr1 (36-531)||(30623607-30624108)
chr1 (306-429)||(16252074-16252197)
chr1 (311-435)||(33042541-33042665)
[»] chr7 (3 HSPs)
chr7 (240-426)||(38862416-38862602)
chr7 (297-456)||(38830665-38830824)
chr7 (58-96)||(38831016-38831054)
[»] chr2 (1 HSPs)
chr2 (311-447)||(4420143-4420279)
[»] chr4 (3 HSPs)
chr4 (275-445)||(19719892-19720062)
chr4 (275-426)||(19840550-19840701)
chr4 (275-445)||(19892783-19892953)


Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 22 - 531
Target Start/End: Original strand, 30629224 - 30629739
Alignment:
Q  22 ttgagaagaagaagtcaagctaagaagttggtccaaatattcagaacccaaatcttccaacaccaacacattttgtgaaacaatgttat------tctcc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||    
T  30629224 ttgagaagaagaagtcaagctaagaagttggtccaaatattcagaacccaaatcttccaacaccaacacattttgtgaaacaatgttattattattctcc 30629323  T
Q  116 atttccctttctacccttttggtctttttgcaattacttgctttagactttcttttcaaagtgtgtttcctcttgagtgctaaaacaggagaagaaccat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30629324 atttccctttctacccttttggtctttttgcaattacttgctttagactttcttttcaaagtgtgtttcctcttgagtgccaaaacaggagaagaaccat 30629423  T
Q  216 ctttttcccaagacttgctaattaccatatctttcaatgattctctcacaacatgttcaggaaaattcaacactgccattgatcctcttgttgataaagc 315  Q
    ||||||||||||||||| || |  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30629424 ctttttcccaagacttgttattctccatatctttcaatgattccctcacaacatgttcaggaaaattcaacactgccattgatcctcttgttgataaagc 30629523  T
Q  316 tgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtctcttatttccgctgcgaat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30629524 tgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtctcttatttccgctgcgaat 30629623  T
Q  416 tttccccatggtcttctcctaactcctctatatggcctcttaggtgatgatgattgtaccaattgagttgaattggatgaaacttcttgtgactccgtgc 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30629624 tttccccatggtcttctcctaactcctctatatggcctcttaggtgatgatgattgtaccaattgagttgaattggatgatacttcttgtgactccgtgc 30629723  T
Q  516 tgacttgagagtttga 531  Q
    ||||||||||||||||    
T  30629724 tgacttgagagtttga 30629739  T

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Target: chr1; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 36 - 531
Target Start/End: Original strand, 30623607 - 30624108
Alignment:
Q  36 tcaagctaagaagttggtccaaatattcagaacccaaatcttccaacaccaacacattttgtgaaacaatgttat------tctccatttccctttctac 129  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||      |||||||||||||||||||    
T  30623607 tcaaactaagaagttggtccaaatattcagaacctaaatcttccaacaccaacacattttgtgaaacaatattattattattctccatttccctttctac 30623706  T
Q  130 ccttttggtctttttgcaattacttgctttagactttcttttcaaagtgtgtttcctcttgagtgctaaaacaggagaagaaccatctttttcccaagac 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30623707 ccttttggtctttttgcaattacttgctttagactttcttttcaaagtgtgtttcctcttgagtgccaaaacaggagaagaaccatctttttcccaagac 30623806  T
Q  230 ttgctaattaccatatctttcaatgattctctcacaacatgttcaggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataag 329  Q
    ||| || |  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30623807 ttgttattctccatatctttcaatgattccctcacaacatgttcaggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataag 30623906  T
Q  330 ctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtctcttatttccgctgcgaattttccccatggtct 429  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  30623907 ctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaacaccttttcttgttgagtctcttatttccgctgcgaattttccccatggtct 30624006  T
Q  430 tctcctaactcctctatatggcctcttaggtgatgatgattgtaccaattgagttgaattggatgaaacttcttgtgactccgtgctgacttgagagttt 529  Q
    ||| ||||||||| | |||| | |||||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||  |||||| |||||| |||    
T  30624007 tcttctaactcctttgtatgacttcttaggtgatgatgattgtactagttgtgttgaattggatgaaacttcttgtgattcattgctgatttgagaattt 30624106  T
Q  530 ga 531  Q
    ||    
T  30624107 ga 30624108  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 306 - 429
Target Start/End: Original strand, 16252074 - 16252197
Alignment:
Q  306 ttgataaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtctcttatttc 405  Q
    |||| ||||| ||||||||||||||||  ||||||||||||||  |||||||||| || | ||| || || |  |||| ||||||||| || ||||||||    
T  16252074 ttgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccatacccttatgccatgtctagttgaatcccttatttc 16252173  T
Q  406 cgctgcgaattttccccatggtct 429  Q
     ||||| ||||| |||||||||||    
T  16252174 tgctgcaaatttcccccatggtct 16252197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 435
Target Start/End: Complemental strand, 33042665 - 33042541
Alignment:
Q  311 aaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtctcttatttccgctg 410  Q
    |||||||||||||||||||| ||||| || ||||| ||  ||||||| || || | ||| || || |  ||||| || || || |||||||| || ||||    
T  33042665 aaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccctcattccattcctcgtcgaatctcttatctctgctg 33042566  T
Q  411 cgaattttccccatggtcttctcct 435  Q
    | ||||| |||||||||||||||||    
T  33042565 caaatttcccccatggtcttctcct 33042541  T

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Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 240 - 426
Target Start/End: Complemental strand, 38862602 - 38862416
Alignment:
Q  240 ccatatctttcaatgattctctcacaacatgttcaggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagctgc 339  Q
    |||| ||||| | |||||||||||| || | ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| ||    
T  38862602 ccatttctttaagtgattctctcactacttcttcaggaaaattcaacactgccaatgaacctcttgttgaaaaagctgcttgatcataagctaaagcagc 38862503  T
Q  340 tgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtctcttatttccgctgcgaattttccccatgg 426  Q
    |||||| || || || ||||| |||||||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||||||||||||    
T  38862502 tgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgcggcaaattttccccatgg 38862416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 297 - 456
Target Start/End: Complemental strand, 38830824 - 38830665
Alignment:
Q  297 atcctcttgttgataaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtc 396  Q
    |||||| |||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| || | |||||||||||| |||| |||    
T  38830824 atcctcgtgttaagaaagctgcttggtcataagctaaagcagctgcttcagctgtatcaaatgttccaatccacacacgaacaccatttcttgttgtgtc 38830725  T
Q  397 tcttatttccgctgcgaattttccccatggtcttctcctaactcctctatatggcctctt 456  Q
     ||||| || ||||||||||||||||| |||| | |||| |||||||||||  |||||||    
T  38830724 ccttatctctgctgcgaattttccccacggtcgtgtcctcactcctctatagagcctctt 38830665  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 38831054 - 38831016
Alignment:
Q  58 atattcagaacccaaatcttccaacaccaacacattttg 96  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38831054 atattcagaacccaaatcttccaacaccaacacattttg 38831016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 311 - 447
Target Start/End: Original strand, 4420143 - 4420279
Alignment:
Q  311 aaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtctcttatttccgctg 410  Q
    ||||| |||| ||||||||||||||| |||  ||||||||||||||||||||||| |||||||||   ||| ||  | | ||| ||||| ||||| ||||    
T  4420143 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgatgaatctctaatttcagctg 4420242  T
Q  411 cgaattttccccatggtcttctcctaactcctctata 447  Q
    |  ||||||||||||| |||||||| |||||||||||    
T  4420243 catattttccccatggccttctccttactcctctata 4420279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 275 - 445
Target Start/End: Original strand, 19719892 - 19720062
Alignment:
Q  275 ggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactc 374  Q
    ||||||||||||||||||| ||| ||||||| | | ||||| ||||| || ||||||||||| ||| |||| || || |  ||||| |||| ||| ||||    
T  19719892 ggaaaattcaacactgccaatgaacctcttgctaaaaaagcagcttggtcgtaagctaaagcagcttcttcggccgtgttgaatgttccaagccatactc 19719991  T
Q  375 taacaccatttctagttgagtctcttatttccgctgcgaattttccccatggtcttctcctaactcctcta 445  Q
    || | || ||||| |||||||| ||||| ||||| |||||||| |||||||| ||||| |  |||||||||    
T  19719992 tagccccttttcttgttgagtcccttatctccgccgcgaatttcccccatggccttcttcgtactcctcta 19720062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 426
Target Start/End: Complemental strand, 19840701 - 19840550
Alignment:
Q  275 ggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactc 374  Q
    |||||||||||||| |||| ||| ||||||| | |  |||| ||||| || ||||||||||| ||| |||| || || |  ||||| |||| ||| ||||    
T  19840701 ggaaaattcaacacagccaatgaacctcttgctaaataagcggcttggtcgtaagctaaagcagcttcttcggccgtgttgaatgttccaagccatactc 19840602  T
Q  375 taacaccatttctagttgagtctcttatttccgctgcgaattttccccatgg 426  Q
    || | || ||||| |||||||| ||||| ||||| |||||||| ||||||||    
T  19840601 tagccccttttcttgttgagtcccttatctccgccgcgaatttcccccatgg 19840550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 275 - 445
Target Start/End: Original strand, 19892783 - 19892953
Alignment:
Q  275 ggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactc 374  Q
    ||||||||||||||||||| ||| ||| ||| ||| ||||| ||||| |||||||||||||| ||| ||||  | || |  ||||| |||| ||| || |    
T  19892783 ggaaaattcaacactgccaatgaaccttttgctgaaaaagcggcttggtcataagctaaagcggcttcttcctccgtgttgaatgttccaagccataccc 19892882  T
Q  375 taacaccatttctagttgagtctcttatttccgctgcgaattttccccatggtcttctcctaactcctcta 445  Q
    || | || ||||| || ||||| ||||| || || |||||||| |||||||| ||||| |  |||||||||    
T  19892883 tagccccttttcttgtcgagtcccttatctcggccgcgaatttcccccatggccttcttcgtactcctcta 19892953  T

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