View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8931_low_14 (Length: 514)
Name: NF8931_low_14
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 38784633 - 38784773
Alignment:
| Q |
19 |
tatgcctcagactctctcaaggttgacttgtttaaacaaatgtactatacaaatcgatataatgcgtgaaaagaattcatcatgcatcatcatataataa |
118 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38784633 |
tatgcctcagactctctcaaggtagactcgtttaaacaaatgtactttacaaatcgatataatgggtgaaaagaattcatcatgcatcatcatataataa |
38784732 |
T |
|
| Q |
119 |
tgatgtgaagtactaatatagaaaagaaatgttatacattata |
161 |
Q |
| |
|
||||||||||||||| ||| |||||| ||||||||||||||| |
|
|
| T |
38784733 |
tgatgtgaagtacta--atacaaaagatatgttatacattata |
38784773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 298 - 448
Target Start/End: Original strand, 38785484 - 38785630
Alignment:
| Q |
298 |
taaaaacaccctccaacacaagttttacattttgcatcctaaatgtcacccttcgtttgagcataatatattgtattacgtacatgaagaatatgaaaaa |
397 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
38785484 |
taaaaacaccctccgacacaagttttacactttgcatcctaaatatcacccttcgttggagcataatatattgca----ctacatgaataatatgaaaaa |
38785579 |
T |
|
| Q |
398 |
ggaccatggctttcaacaatccttcgtgtaagtatgtccctaaaggtaacc |
448 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||| ||||| |||||| |
|
|
| T |
38785580 |
ggaccatggctttcaatagtccttcgtgtaactatgtctctaaaagtaacc |
38785630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 38780113 - 38780190
Alignment:
| Q |
175 |
ttacttgagtattcacaacttcataaaagaataataataagagagtttcttgtcttattctattaatttctcgcatgtc |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |||||||||||||||| |
|
|
| T |
38780113 |
ttacttgagtattcacaacttcataaaagaataataataagagagtttcttatcttatac-aataatttctcgcatgtc |
38780190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 38779821 - 38779895
Alignment:
| Q |
106 |
catcatataataatgatgtgaagtactaatatagaaaagaaatgttatacattatacgtatgttgagaattacttga |
182 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
38779821 |
catcatataataatgatgtgaagtacta--atacaaaataaatgttatacataatatggatgttgagaattacttga |
38779895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University