View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8931_low_17 (Length: 423)
Name: NF8931_low_17
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 24020759 - 24021170
Alignment:
| Q |
1 |
taatgactttgtgtactgtttcgtttctgttcttcaactgttaaggnnnnnnn---caacttcaatatcactgctatgatggatactgctccgattaaga |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24020759 |
taatgactttgtgtactgtttcgtttctgttcttcaactgttaaggttttttttttcaacttcaatatcactgccatgatggatactgctccgattaaga |
24020858 |
T |
|
| Q |
98 |
agcaacctcaatccaatgcactgcagccgacaggacagttccttccggacgatctaatagtcgaaatcttgttagtccttgacgtccaaaccatctttcc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24020859 |
agcaacctcaatccaatgcactgcagccgataggacagttccttccggacgatctaatcgtcgaaatcttgttattccttgacgtccaaaccatctttcc |
24020958 |
T |
|
| Q |
198 |
cctcaaatgtcttagcaagtcattaaactctcttatttccgatccagagttcgttnnnnnnncaccttaaaaattcctctcaatacccacacctcattct |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24020959 |
cctcaaatgtcttagcaagtcattaaactctcttatttccgatccagagttcgtt-aaaaaacaccttaaaaattcctctcaatacccacacctcattct |
24021057 |
T |
|
| Q |
298 |
cacagnnnnnnnttcagaatatgttatgagtagtgtcaagaccttacccgttcgtcgtttgctggagaatcagccgtttactttttccggtgatcgtcac |
397 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24021058 |
cacagaaaaaaattcagaatatgttatgagtagtgtcaagaccttaccggttcgtcgtttgctggagaatcagccgtttactttttccggtgatcgtcac |
24021157 |
T |
|
| Q |
398 |
cgtggtggtatga |
410 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24021158 |
cgtggtggtatga |
24021170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 102 - 367
Target Start/End: Original strand, 24030350 - 24030614
Alignment:
| Q |
102 |
acctcaatccaatgcactgcagccgacaggacagttccttccggacgatctaatagtcgaaatcttgttagtccttgacgtccaaaccatctttcccctc |
201 |
Q |
| |
|
||||||||||||||| || | |||| | |||| ||||||| || ||||| || ||||||||| | || ||||||||||||||||| |||| || ||| |
|
|
| T |
24030350 |
acctcaatccaatgccctttcgtcgacggaacagctccttcccgatgatctgatcgtcgaaatcctagtattccttgacgtccaaaccctcttgccgctc |
24030449 |
T |
|
| Q |
202 |
aaatgtcttagcaagtcattaaactctcttatttccgatccagagttcgttnnnnnnncaccttaaaaattcctctcaatacccacacctcattctcaca |
301 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| |||||| ||||| | |||||||| || |||||||||||| ||||||||||||||||| |
|
|
| T |
24030450 |
aaatgccttagcaagtcattacactctcttatttctgatccaaagttc-atcaaaaaacaccttaagaactcctctcaatacacacacctcattctcaca |
24030548 |
T |
|
| Q |
302 |
gnnnnnnnttcagaatatgttatgagtagtgtcaagaccttacccgttcgtcgtttgctggagaat |
367 |
Q |
| |
|
| || || || |||||||| |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
24030549 |
gatgaactttacgattacagtatgagtaatgtcaagaccttacccgtgcgtcgtttgctcgagaat |
24030614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University