View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8931_low_18 (Length: 420)
Name: NF8931_low_18
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 1151072 - 1150695
Alignment:
| Q |
18 |
agatggaatggaggaaatgctatttggatgtaatattggttcctttggcaatgctaattagcattggttaccatgtttggctttggcataaggttagaac |
117 |
Q |
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| T |
1151072 |
agatggaatggaggaaatgctatttggatgtaatattggttcctttggcaatgctaattagcattggttaccatgtttggctttggcataaggttagaac |
1150973 |
T |
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| Q |
118 |
tcaaccacacacaaccattgttggcatcaatgctagtggtcgtagaaattgggttaatgctatgatgaaggtacttatatattcacttttctaaaattta |
217 |
Q |
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| T |
1150972 |
tcaaccacacacaaccattgttggcatcaatgctagtggtcgtagaaattgggttaatgctatgatgaaggtacttatatattcacttttctaaaattta |
1150873 |
T |
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| Q |
218 |
gtttatttactatccctataaatctttatcattatgaatcatactcttttacttattaaaagtttgatcattgaatgttatccccttcacaccttcttca |
317 |
Q |
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| T |
1150872 |
gtttatttactatccctataaatctttatcattatgaatcatactcttttacttattaaaagtttgatcattgaatgttatccccttcacaccttcttca |
1150773 |
T |
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| Q |
318 |
aatgnnnnnnnnnnnnnnnnnntgatcattgtatcaattacnnnnnnnnaacaattacttcaagaaaccatatattttatgatggtatt |
406 |
Q |
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| T |
1150772 |
aatg-----------aaaaaaatgatcattgtatcaattacttttttttaacaattacttcaagaaaccatatattttatgatggtatt |
1150695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 50521337 - 50521479
Alignment:
| Q |
14 |
agagagatggaatggaggaaatgctatttggatgtaatattggttcctttggcaatgctaattagcattggttaccatgtttggctttggcataaggtta |
113 |
Q |
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| T |
50521337 |
agagatatggaatggaagaaatgttatttggatgtgatattagtgccattagcaattctattaagcattggttaccatgtttggctgtggtacaatgttc |
50521436 |
T |
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| Q |
114 |
gaactcaaccacacacaaccattgttggcatcaatgctagtgg |
156 |
Q |
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| T |
50521437 |
gaactcatcctcatacaactatcattgccatcaatgccagtgg |
50521479 |
T |
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