View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8931_low_20 (Length: 406)
Name: NF8931_low_20
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 56492602 - 56492215
Alignment:
| Q |
1 |
tggaccggaatcaaacttatagcctttgacatcaaaagaatgagcagcacctccagcatggtcgtggctttcgaaaacgacaacatcttgttcatatctt |
100 |
Q |
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| T |
56492602 |
tggaccggaatcaaacttatagcctttgacatcaaaagaatgagcagcacctccagcatggtcgtggctttcgaaaacgacaacatcttgttcatatctt |
56492503 |
T |
|
| Q |
101 |
gccaacagtgctgcacaactcagtccaccaataccactcccaatcacaattacatctgtttctgtttcatctactttgttgctgctgtttcgcaccacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492502 |
gccaacagtgctgcacaactcagtccaccaataccactcccaatcacaattacatctgtttctgtttcatctactttgttgctgctgtttcgcaccacaa |
56492403 |
T |
|
| Q |
201 |
ccccacctttcctaatcctcccattactatgactatgatgatcatcatcatcaattcttgaacagtatcttctcactctcattacattacaaggaaacac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
56492402 |
ccccacctttcctaatcctcccattactatgactatgatgatgatcatcatcaattcttgaacagtattttctcactctcattacattacaaggaaacac |
56492303 |
T |
|
| Q |
301 |
accaacacttacacccctcatcgcattcatggcatggcatagcatggaaaccaaacaccaaatcaaatattatgttgttgtttctttt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492302 |
accaacacttacacccctcatcgcattcatggcatggcatagcatggaaaccaaacaccaaatcaaatattatgttgttgtttctttt |
56492215 |
T |
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