View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8931_low_22 (Length: 398)
Name: NF8931_low_22
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 382
Target Start/End: Complemental strand, 31002104 - 31001733
Alignment:
| Q |
11 |
cataggtggaaacaaataagtatcaacaatcttaggagaacgaagattttgaaggtctgttcttttaagtttcatggtgtgattttttgtgttgatttca |
110 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31002104 |
cataggtggaaacaaataagtatcaacaaacttaggagaacaaagattttgaaggtctgttcttttaagtttcatggtgtgattttttgtgttgatttca |
31002005 |
T |
|
| Q |
111 |
agtacagtgaaattttgtgaggatatcagaatggtagtaatattgtcttcgtggcagttaaggtaaaaatgatggcccgcgccgcagtgagaaggacgat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31002004 |
agtacagtgaaattttgtgaggatatcagaatggtagtaatattgtcttcgtggcagttaaggtaaaaatgatggcccgcgccgcagtgagaaggacgat |
31001905 |
T |
|
| Q |
211 |
tttctccccagaatggataagagatgttggtgagatttccacagttataggaattttttatgtctctacaagtggaataatcatcaataaccagttgaga |
310 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31001904 |
tttttccccagaatggataagagatgttggtgagatttccacagttataggaattttttatgtctctacaagtggaataatcatcaataaccagttgaga |
31001805 |
T |
|
| Q |
311 |
tgtatgtggaagaagaatggtaattattattactaagaagaaagagatgtatgtaatttttatgagtatagg |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31001804 |
tgtatgtggaagaagaatggtaattattattactaagaagaaagagatgtatgtaatttttatgagtatagg |
31001733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 15523165 - 15523416
Alignment:
| Q |
14 |
aggtggaaacaaataagtatcaacaatcttaggagaacgaagattttga---aggtctgttcttttaagtttcatggtgtgattttttgtgttgatttca |
110 |
Q |
| |
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|||||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||| ||||| ||| |||| | ||| |||| || ||| |
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| T |
15523165 |
aggtggaaacaaataagtatcattaaatttaggagaacatagattttgatcaaggtctgttcttttgagtttgatgatgtggtctttgctgtttatatca |
15523264 |
T |
|
| Q |
111 |
agtacagtgaaattttgtgaggatatcagaatggtagtaatattgtcttcgtggcagttaaggtaaaaatgatggcccgcgccgcagtgagaaggacgat |
210 |
Q |
| |
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||||| ||||||||||||||||||| |||||||| || | |||| | ||||||||||||||||||| | | ||| || || || ||| ||||||||| |
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| T |
15523265 |
agtactgtgaaattttgtgaggataagagaatggtggtggtgttgttgttgtggcagttaaggtaaaaagggttgccagccccacattgaaaaggacgat |
15523364 |
T |
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| Q |
211 |
tttctccccagaatggataagagatgttggtgagatttccacagttatagga |
262 |
Q |
| |
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||| |||||| ||||||||||||||||||| | |||||||||||| ||||| |
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| T |
15523365 |
tttgtccccaaaatggataagagatgttggaaatatttccacagttgtagga |
15523416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 266 - 382
Target Start/End: Complemental strand, 30985057 - 30984941
Alignment:
| Q |
266 |
ttttatgtctctacaagtggaataatcatcaataaccagttgagatgtatgtggaagaagaatggtaattattattactaagaagaaagagatgtatgta |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||| |
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| T |
30985057 |
ttttatgtctctacaagtggaataatcatcgataactagttgagatgtatgtggaaaaagagtggtagttattattactaagaagaaagagatgtgtgta |
30984958 |
T |
|
| Q |
366 |
atttttatgagtatagg |
382 |
Q |
| |
|
|| || ||||| ||||| |
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| T |
30984957 |
atattgatgagcatagg |
30984941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 266 - 382
Target Start/End: Complemental strand, 30991221 - 30991105
Alignment:
| Q |
266 |
ttttatgtctctacaagtggaataatcatcaataaccagttgagatgtatgtggaagaagaatggtaattattattactaagaagaaagagatgtatgta |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||| |
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| T |
30991221 |
ttttatgtctctacaagtggaataatcatcgataactagttgagatgtatgtggaaaaagagtggtagttattattactaagaagaaagagatgtgtgta |
30991122 |
T |
|
| Q |
366 |
atttttatgagtatagg |
382 |
Q |
| |
|
|| || ||||| ||||| |
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|
| T |
30991121 |
atattgatgagcatagg |
30991105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 31012656 - 31012372
Alignment:
| Q |
14 |
aggtggaaacaaataagtatcaacaatcttaggagaacgaagattttga---aggtctgttcttttaagtttcatggtgtgattttttgtgttgatttca |
110 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||| |||||||||| |||||||||||||| |||||||||||||| |||| | ||||||| ||| |
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| T |
31012656 |
aggtggaaacaaataagtatcattatattgaggagaacaaagattttgatcaaggtctgttcttttgagtttcatggtgtgtttttctatgttgatgtca |
31012557 |
T |
|
| Q |
111 |
agtacagtgaaattttgtgaggatatcagaatggtagtaatattgtcttcgtggcagttaaggtaaaaatgatggcccgcgccgcagtgagaaggacgat |
210 |
Q |
| |
|
||||| ||||| ||||||||| ||| || |||||||||| |||| | |||||||| ||||| | | | | ||| || || || ||| ||||||||| |
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| T |
31012556 |
agtactgtgaatttttgtgagtataacaaaatggtagtatctttgttattgtggcagtaaaggtgatacgggttgccagcaccacaatgaaaaggacgat |
31012457 |
T |
|
| Q |
211 |
tttctccccagaatggataagagatgttgg---tgagatttccacagttataggaattttttatgtctctacaagtggaataatc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | | |||| ||| | || || ||||| |||||| |||||||||||||||| |
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| T |
31012456 |
tttctccccagaatggataagagatgttggagataatacttccgcagctgtaagagtttttgatgtctttacaagtggaataatc |
31012372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 31212023 - 31211779
Alignment:
| Q |
17 |
tggaaacaaataagtatcaacaatcttaggagaacgaagattttga---aggtctgttcttttaagtttcatggtgtgattttttgtgttgatttcaagt |
113 |
Q |
| |
|
|||| |||||||||| ||| ||| || ||||| || ||||||||| ||||| |||||||| ||| ||||||||| | ||| || || || |||||| |
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| T |
31212023 |
tggagacaaataagtttcatcaaactgaggagcacaaagattttgggataggtcagttcttttgagtatcatggtgtaactttgtgagtaaatatcaagt |
31211924 |
T |
|
| Q |
114 |
acagtgaaattttgtgaggatatcagaatggtagtaatattgtcttcgtggcagttaaggtaaaaatgatggcccgcgccgcagtgagaaggacgatttt |
213 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||| | ||| |||||||||| ||||||||||||| |
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| T |
31211923 |
attgtgaaattttgtgaggatattagaatggtagtaatgtt---tttgtggcagttaaggtaaaaatgcttgccggcgccgcagtacgaaggacgatttt |
31211827 |
T |
|
| Q |
214 |
ctccccagaatggataagagatgttggtgagatttccacagttatagg |
261 |
Q |
| |
|
||||||||||||||| | ||||||| | |||||||||||| |||| |
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|
| T |
31211826 |
gtccccagaatggatagtaaatgttggacaaatttccacagttgtagg |
31211779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 30958848 - 30958582
Alignment:
| Q |
14 |
aggtggaaacaaataagtatcaacaatctt-aggagaacgaagattttga---aggtctgttcttttaagtttcatggtgtgattttttgtgttgatttc |
109 |
Q |
| |
|
|||||||||||||||||||| || || || |||||||| |||||||||| |||||||||||||| |||||||||||||| ||| | ||||||| || |
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| T |
30958848 |
aggtggaaacaaataagtat-aattatattgaggagaacaaagattttgatcaaggtctgttctttttagtttcatggtgtgtgtttctatgttgatgtc |
30958750 |
T |
|
| Q |
110 |
aagtacagtgaaattttgtgaggatatcagaatggtagtaatattgtcttcgtggcagttaaggtaaaaatgatggcccgcgccgcagtgagaaggacga |
209 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||| || || | ||| | |||||||||||||| | | || || || || ||||| ||||| |
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|
| T |
30958749 |
aagtactgttaaattttgtgaggataacagaatggtagtgatgttattttccttacagttaaggtaaaatggtttaccagctccacaaggagaaagacga |
30958650 |
T |
|
| Q |
210 |
ttttctccccagaatggataagagatgttggtgagatttccacagttataggaattttttatgtctct |
277 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||| ||||| ||| | ||||| |||||||| |
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|
| T |
30958649 |
ttttgtccccagaacggataagagatgttggtgattcttccgcagttgtagaagtttttgatgtctct |
30958582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 62 - 229
Target Start/End: Complemental strand, 31221839 - 31221672
Alignment:
| Q |
62 |
aaggtctgttcttttaagtttcatggtgtgattttttgtgttgatttcaagtacagtgaaattttgtgaggatatcagaatggtagtaatattgtcttcg |
161 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| ||| || ||| || |||||||| |||||||||||||| |||| ||||||||||||||| ||| | | |
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|
| T |
31221839 |
aaggtctgttctcttaagtttgatggtgtgaatttgtgagttaatatcaagtactgtgaaattttgtgatgataatagaatggtagtaatactgttgttg |
31221740 |
T |
|
| Q |
162 |
tggcagttaaggtaaaaatgatggcccgcgccgcagtgagaaggacgattttctccccagaatggata |
229 |
Q |
| |
|
||||||||||||||||| | | ||| ||||| ||| || | |||||||||| |||||| |||||||| |
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|
| T |
31221739 |
tggcagttaaggtaaaacgggttgccggcgccacagcgatacggacgattttgtccccaaaatggata |
31221672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 291
Target Start/End: Complemental strand, 15493134 - 15493046
Alignment:
| Q |
203 |
aggacgattttctccccagaatggataagagatgttggtgagatttccacagttataggaattttttatgtctctacaagtggaataat |
291 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||| || |||||||||||| ||||| || || |||||| ||||| | ||||||| |
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| T |
15493134 |
aggacgactttgtccccagaatggataagagatgttggagatatttccacagttgtaggagttcttgatgtctttacaacttgaataat |
15493046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 30664004 - 30664094
Alignment:
| Q |
44 |
aggagaacgaagattttga---aggtctgttcttttaagtttcatggtgtgattttttgtgttgatttcaagtacagtgaaattttgtgag |
131 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| ||||| ||| |||||||| ||||||| |||| |||||| |||||||||||||| |
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|
| T |
30664004 |
aggagaacaaagattttgatcaaggtctgttcttttgagtttgatgatgtgatttgttgtgtttatttgaagtacgttgaaattttgtgag |
30664094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 31012319 - 31012271
Alignment:
| Q |
333 |
attattattactaagaagaaagagatgtatgtaatttttatgagtatag |
381 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| || ||||| |||| |
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|
| T |
31012319 |
attattattactaagaagaaagagatgtgtgtaatattgatgaggatag |
31012271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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