View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8931_low_23 (Length: 377)
Name: NF8931_low_23
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 377
Target Start/End: Complemental strand, 8792848 - 8792485
Alignment:
| Q |
15 |
agaaacaaagagctaagacattatccattcccacaaaatgaaaacaaatcacataatgccacgttggattaacgtatctatggccatctaatatcagcat |
114 |
Q |
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| T |
8792848 |
agaaacaaagagctaagacattatccattcccacaaaatgaaaacaaatcacataatgccacgttggattaacgtatctatggccatctaatatcagcat |
8792749 |
T |
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| Q |
115 |
tctgaagccacaaatttcttatatggttaccattagattctgcttacttcttacatcataatatcataaccttcaaaatctttgtgtgtgacaaataaac |
214 |
Q |
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| T |
8792748 |
tctgaagccacaaatttcttatatggttaccattagattctgcttacttcttacatcataatatcataaccttcaaaatctttgtgtgtgacaaataaac |
8792649 |
T |
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| Q |
215 |
tt-aaagagagattcataactcaattttatttttcatttgctctcatagtttgaacaaatggcaacttctatgatgacaactttgcctcaattcactggt |
313 |
Q |
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| T |
8792648 |
ttaaaagagagattcataactcaattttatttttcatttgctctcatagtttgaacaaatggcaacttctatgatgataactttgcctcaattcactggt |
8792549 |
T |
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| Q |
314 |
cttagatcacaactcaaaccttctcctatccagggtttggtaattaaccactcttttcatgtca |
377 |
Q |
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| T |
8792548 |
cttagatcacaactcaaaccttctcctatccagggtttggtaattcaccactcttttcatgtca |
8792485 |
T |
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