View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8931_low_27 (Length: 343)
Name: NF8931_low_27
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 75 - 327
Target Start/End: Complemental strand, 9629081 - 9628831
Alignment:
| Q |
75 |
ttttgtagcaattcttttagtatttttgtagtgtaataaattattatctcacgtctctcatacatttatgtttctttttaattagtatgacatattctaa |
174 |
Q |
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| T |
9629081 |
ttttatagcaattgttttattatttttatagt--aacaaattattatctcacgtctcttacacatttatgtttctttgtaattaatatgacatattctaa |
9628984 |
T |
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| Q |
175 |
aattttaattttagggttgcatgctcttttgggacatcgataacatttacagtcgatagtggagccaacccatactattttgctactgaaatagaatatg |
274 |
Q |
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| T |
9628983 |
atttttaattttagggttgcatgctcttttgggacatcaataacatttgcagtcgatagtggagccaacccatactattttgctacagaaatagaatatg |
9628884 |
T |
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| Q |
275 |
aaaatggagatggtgacattgtatctgtagaattgaatcaatcaagaagatgg |
327 |
Q |
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| T |
9628883 |
aaaatggagatggtgacattgtatctgtagaattgaatcaatcaagaagatgg |
9628831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9629234 - 9629158
Alignment:
| Q |
1 |
gaaatggtatacttcaataaaaaagttactaataatgttattcagaaaatcatgaaattaaaaattcctttacttttt |
78 |
Q |
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| T |
9629234 |
gaaatagtatacttcaataaaaa-gttaccaataatgttttacagaaaatcatgaaattaaaaattcctttacctttt |
9629158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 291
Target Start/End: Complemental strand, 17444107 - 17444003
Alignment:
| Q |
187 |
agggttgcatgctcttttgggacatcgataacatttacagtcgatagtggagccaacccatactattttgctactgaaatagaatatgaaaatggagatg |
286 |
Q |
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| T |
17444107 |
agggttgcatgctcttttggaaattcaatagtcttcacaattgataatggagccaacccatactgttttgcaacagaaatagaatatgaaaatggaaatg |
17444008 |
T |
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| Q |
287 |
gtgac |
291 |
Q |
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||||| |
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| T |
17444007 |
gtgac |
17444003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 9642986 - 9642946
Alignment:
| Q |
287 |
gtgacattgtatctgtagaattgaatcaatcaagaagatgg |
327 |
Q |
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| T |
9642986 |
gtgatattgtatctgtagaattgaatcaatcaagaagatgg |
9642946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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