View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8931_low_33 (Length: 309)

Name: NF8931_low_33
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8931_low_33
NF8931_low_33
[»] chr7 (15 HSPs)
chr7 (1-163)||(4909507-4909670)
chr7 (194-298)||(4909372-4909476)
chr7 (76-160)||(7400046-7400130)
chr7 (6-61)||(45870380-45870435)
chr7 (81-137)||(33683083-33683139)
chr7 (3-91)||(2223277-2223367)
chr7 (5-63)||(27169901-27169959)
chr7 (81-146)||(30866417-30866481)
chr7 (94-131)||(46415206-46415243)
chr7 (81-137)||(24504766-24504822)
chr7 (81-137)||(30534787-30534843)
chr7 (81-137)||(32699603-32699659)
chr7 (81-137)||(32964294-32964350)
chr7 (81-137)||(35888394-35888450)
chr7 (81-137)||(49045019-49045075)
[»] chr8 (9 HSPs)
chr8 (3-163)||(41429317-41429477)
chr8 (3-163)||(3441890-3442041)
chr8 (67-163)||(12655540-12655636)
chr8 (3-53)||(9615905-9615955)
chr8 (67-137)||(5449232-5449302)
chr8 (81-137)||(5244526-5244582)
chr8 (81-137)||(17336500-17336556)
chr8 (81-137)||(19176218-19176274)
chr8 (81-137)||(23894805-23894861)
[»] chr1 (11 HSPs)
chr1 (3-156)||(11643757-11643910)
chr1 (6-96)||(9141331-9141422)
chr1 (3-52)||(14499981-14500030)
chr1 (5-86)||(15926377-15926458)
chr1 (3-52)||(1930402-1930451)
chr1 (3-83)||(1936890-1936970)
chr1 (81-137)||(30996826-30996882)
chr1 (15-50)||(21973212-21973247)
chr1 (97-137)||(15302659-15302699)
chr1 (72-136)||(24023717-24023781)
chr1 (81-137)||(35945290-35945346)
[»] chr2 (9 HSPs)
chr2 (3-163)||(37039061-37039221)
chr2 (12-163)||(27341344-27341495)
chr2 (3-50)||(36034735-36034782)
chr2 (94-137)||(34432112-34432155)
chr2 (69-137)||(12873591-12873659)
chr2 (20-108)||(7475212-7475300)
chr2 (81-137)||(30858020-30858076)
chr2 (81-137)||(41422594-41422650)
chr2 (81-137)||(41494521-41494577)
[»] chr4 (15 HSPs)
chr4 (1-163)||(24154243-24154405)
chr4 (4-137)||(45789273-45789406)
chr4 (18-155)||(22129631-22129768)
chr4 (3-163)||(30783731-30783893)
chr4 (3-163)||(7205203-7205362)
chr4 (3-59)||(7325984-7326040)
chr4 (81-137)||(38613489-38613545)
chr4 (69-131)||(24073013-24073075)
chr4 (94-131)||(30010763-30010800)
chr4 (86-131)||(53564260-53564305)
chr4 (81-137)||(6656643-6656699)
chr4 (81-137)||(13498385-13498441)
chr4 (81-137)||(23390247-23390303)
chr4 (81-137)||(32684679-32684735)
chr4 (81-137)||(39797516-39797572)
[»] chr6 (9 HSPs)
chr6 (34-156)||(1083553-1083675)
chr6 (34-156)||(1086199-1086321)
chr6 (34-155)||(1082204-1082324)
chr6 (34-155)||(1084843-1084963)
chr6 (81-137)||(8217618-8217674)
chr6 (81-137)||(6418551-6418607)
chr6 (81-137)||(8345322-8345378)
chr6 (81-137)||(22710348-22710404)
chr6 (81-137)||(27581468-27581524)
[»] chr5 (6 HSPs)
chr5 (3-87)||(34258542-34258626)
chr5 (13-163)||(29999846-29999995)
chr5 (69-137)||(16285077-16285145)
chr5 (81-137)||(21069719-21069775)
chr5 (67-95)||(34258505-34258533)
chr5 (81-137)||(41687012-41687068)
[»] chr3 (9 HSPs)
chr3 (3-123)||(11354648-11354769)
chr3 (34-154)||(55000612-55000730)
chr3 (46-153)||(51972117-51972225)
chr3 (3-113)||(26495925-26496035)
chr3 (81-137)||(1111547-1111603)
chr3 (3-63)||(2131496-2131556)
chr3 (81-137)||(12918737-12918793)
chr3 (81-137)||(44561595-44561651)
chr3 (81-137)||(48904162-48904218)
[»] scaffold0117 (1 HSPs)
scaffold0117 (38-130)||(17010-17105)
[»] scaffold0236 (1 HSPs)
scaffold0236 (81-137)||(17546-17602)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 4909670 - 4909507
Alignment:
Q  1 gctgacaattgtta-ttgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaa 99  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4909670 gctgacaattgttaattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtgagtatttattatatattgcagaaaattatgcaa 4909571  T
Q  100 aataaataaggatataatggtaaagaaataatcaatgtgtattgaaatttgaaagggatcttat 163  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  4909570 aataaatagggatatagtggtaaagaaataatcaatgtgtattgaaatttgaaagggaccttat 4909507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 4909476 - 4909372
Alignment:
Q  194 ttttataattagggacggatttagtggtctgtcacataatgcaacaatagattagatagtatattagcaaccacattaactttcacaataacaaggaaca 293  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4909476 ttttataattagggatggatctagtggtctgtcacataatgcaacaatagattagatagtatatcagcaaccacattaactttcacaataacaaggaaca 4909377  T
Q  294 ccaaa 298  Q
     ||||    
T  4909376 tcaaa 4909372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 7400130 - 7400046
Alignment:
Q  76 tatatattgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgtgtattgaaatttgaaagggatct 160  Q
    |||||||||||||||| ||||||| ||||||| ||||||  |||||||||  |||| | |||  |||||||||||||||||||||    
T  7400130 tatatattgcagaaaaatatgcaacataaatagggatatcgtggtaaagatttaattattgtacattgaaatttgaaagggatct 7400046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 45870435 - 45870380
Alignment:
Q  6 caattgttattgttttacatgtttaccctttatgaaagagaattagtagatgtttt 61  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||||||  |||||||    
T  45870435 caattgtcattgttttacatgtttatcctttaagaaagagaattagttaatgtttt 45870380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 33683083 - 33683139
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||| ||||||||||||||||| |||  ||||||||||||||| |||||    
T  33683083 attgaagaaaatgatgcaaaataaataagggtatgttggtaaagaaataattaatgt 33683139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 2223367 - 2223277
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttca-gta-agtatttattatatattgcagaaaa 91  Q
    ||||||||  ||| |||||||| ||||||||||||||| || |||||||| ||||||| ||  || ||||||||||| ||||| |||||||    
T  2223367 tgacaatttgtatagttttacaagtttaccctttatgagagtgaattagttgatgtttgcatatagagtatttattacatattccagaaaa 2223277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 27169901 - 27169959
Alignment:
Q  5 acaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttca 63  Q
    ||||||| |||||||||||||||||||| ||||||| ||| ||||| |  |||||||||    
T  27169901 acaattgctattgttttacatgtttaccttttatgagagataattaattaatgttttca 27169959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 30866417 - 30866481
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgtgtattgaaa 146  Q
    |||| ||||||| ||||||||||||||| | |||  ||||||||||||||| ||||| ||||||||    
T  30866417 attgaagaaaatgatgcaaaataaataaaggtatgttggtaaagaaataattaatgt-tattgaaa 30866481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 46415206 - 46415243
Alignment:
Q  94 atgcaaaataaataaggatataatggtaaagaaataat 131  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  46415206 atgcaaaataaataagggtatgatggtaaagaaataat 46415243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 24504822 - 24504766
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  24504822 attgaagaaaaagatgcaaaataaataagggtatgttggtaaagaaataattaatgt 24504766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 30534843 - 30534787
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  30534843 attgaagaaaaagatgcaaaataaataagggtatgttggtaaagaaataattaatgt 30534787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 32699603 - 32699659
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  32699603 attgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataattaatgt 32699659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 32964294 - 32964350
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  32964294 attgaagaaaaagatgcaaaataaataagggtatgttggtaaagaaataattaatgt 32964350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 35888450 - 35888394
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  35888450 attgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataattaatgt 35888394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 49045019 - 49045075
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||| ||||| |||| ||||||||||||||| |||||    
T  49045019 attgaagaaaaagatgcaaaataattaagggtatattggtaaagaaataattaatgt 49045075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 41429477 - 41429317
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaat 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||   |||||||||| ||||||| |||||| ||||||| ||    
T  41429477 tgacaattgttattgttttacatgtttaccctttatgaaagagaatcagtggatgttttcatagagtatttattgtatattgtagaaaaatatgcaacat 41429378  T
Q  103 aaataaggatataatggtaaagaaataatcaatgtgtattgaaatttgaaagggatcttat 163  Q
    ||||| ||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||    
T  41429377 aaatagggatataatggtaaagaaataattaatgtacattaaaatttgaaagggatcttat 41429317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 3441890 - 3442041
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaat 102  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||         || | | |||||||||||| ||||||| ||    
T  3441890 tgacaattgttattgttttacatgtttaccctttatgatagaaaattagttgatgttttca---------tagtgtttattgcagaaaaatatgcaacat 3441980  T
Q  103 aaataaggatataatggtaaagaaataatcaatgtgtattgaaatttgaaagggatcttat 163  Q
    ||||| ||| ||||||||||| ||||||| |||||  ||||||||||||||||||||||||    
T  3441981 aaatagggaaataatggtaaaaaaataattaatgtacattgaaatttgaaagggatcttat 3442041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 12655636 - 12655540
Alignment:
Q  67 agtatttattatatattgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgtgtattgaaatttgaaagggatcttat 163  Q
    ||||||||||||||||||||||||| |||| |||||||||| | ||||| | ||||||||||||| ||| |  ||| ||||||||||  ||||||||    
T  12655636 agtatttattatatattgcagaaaaatatgaaaaataaataggaatatagtagtaaagaaataattaatatacattaaaatttgaaaaagatcttat 12655540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 9615905 - 9615955
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagta 53  Q
    |||||||||||||| |||||| ||||||||||| || ||||||||||||||    
T  9615905 tgacaattgttattattttacttgtttacccttaataaaagagaattagta 9615955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 5449302 - 5449232
Alignment:
Q  67 agtatttattatatattgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    ||||||||||||  |||| ||||||| ||||||||||||||| | |||  ||||||| ||||||| |||||    
T  5449302 agtatttattattgattgaagaaaatgatgcaaaataaataaaggtatgttggtaaaaaaataattaatgt 5449232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 5244526 - 5244582
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| |||||| |||||||||||||||||| |||  ||||||| ||||||| |||||    
T  5244526 attgaagaaaaatatgcaaaataaataagggtatgttggtaaaaaaataattaatgt 5244582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 17336556 - 17336500
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  17336556 attgaagaaaaagatgcaaaataaataagggtatgttggtaaagaaataattaatgt 17336500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 19176274 - 19176218
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  19176274 attgaagaaaaagatgcaaaataaataagggtatgttggtaaagaaataattaatgt 19176218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 23894805 - 23894861
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  |||||||||||||||||||||  | ||||||||||||| |||||    
T  23894805 attgaagaaaaagatgcaaaataaataaggatatgttagtaaagaaataattaatgt 23894861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 11643757 - 11643910
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaat 102  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||   ||||||||||||||||||||||||| ||||||| ||    
T  11643757 tgacaattgttattgttttacatgtttaccctttatgaaaaataattagttgatgttttcatagagtatttattatatattgcagaaaaatatgcaacat 11643856  T
Q  103 aaataaggatataatggtaaagaaataatcaatgtgtattgaaatttgaaaggg 156  Q
    ||||   |||||||||||||| ||||||| |||||  |||||||||||||||||    
T  11643857 aaattgagatataatggtaaaaaaataattaatgtacattgaaatttgaaaggg 11643910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 9141422 - 9141331
Alignment:
Q  6 caattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagta-tttattatatattgcagaaaattatg 96  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||   |||| ||||||||||||||||||||| ||||    
T  9141422 caattgttattgttttacatatttaccatttatgaaagagaattagttggtgttttcatagagtattttattatatattgcagaaaaatatg 9141331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 14500030 - 14499981
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagt 52  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  14500030 tgacaattattattgttttacatgtttaccctttaagaaagagaattagt 14499981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 15926377 - 15926458
Alignment:
Q  5 acaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgca 86  Q
    ||||||||||||| |||||| |||||  ||||| |||||||||||| |  |||||||||  |||||||||||||||||||||    
T  15926377 acaattgttattgatttacaagtttatactttaggaaagagaattatttaatgttttcatgaagtatttattatatattgca 15926458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 1930451 - 1930402
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagt 52  Q
    ||||||||||| |||||||||| |||||||||||| ||||||||||||||    
T  1930451 tgacaattgttgttgttttacaagtttaccctttaagaaagagaattagt 1930402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 1936970 - 1936890
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatatt 83  Q
    ||||||||||| |||||||||| |||||||||| | || |||||||||||  ||||| |||  |||||||||||| |||||    
T  1936970 tgacaattgttgttgttttacaagtttacccttgaagagagagaattagttaatgttgtcataaagtatttattacatatt 1936890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 30996882 - 30996826
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  |||||||||||||||||||||  ||||||||||||||| |||||    
T  30996882 attgaagaaaaagatgcaaaataaataaggatatgttggtaaagaaataattaatgt 30996826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 21973247 - 21973212
Alignment:
Q  15 ttgttttacatgtttaccctttatgaaagagaatta 50  Q
    |||||||| |||||||||||||||||||||||||||    
T  21973247 ttgttttaaatgtttaccctttatgaaagagaatta 21973212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 15302659 - 15302699
Alignment:
Q  97 caaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    ||||||||||||||||||  ||||||||||||||| |||||    
T  15302659 caaaataaataaggatatgttggtaaagaaataattaatgt 15302699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 24023717 - 24023781
Alignment:
Q  72 ttattatatattgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatg 136  Q
    |||| |||||||||||||||||||  || |||||||||  |||| | ||||||||||||| ||||    
T  24023717 ttatcatatattgcagaaaattatataacataaataagagtatattagtaaagaaataattaatg 24023781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 35945346 - 35945290
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||| |||||  ||||||||||||||| |||||    
T  35945346 attgaagaaaaagatgcaaaataaataaagatatgttggtaaagaaataattaatgt 35945290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 37039221 - 37039061
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaat 102  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||||| ||||||| ||    
T  37039221 tgacaatttttattgttttacatgtttaccttttatgaaagagaattagtggatgttttcataaagtatttattatatattgtagaaaaatatgcaacat 37039122  T
Q  103 aaataaggatataatggtaaagaaataatcaatgtgtattgaaatttgaaagggatcttat 163  Q
    |||||  |||||  |||||||||||| || ||||| ||||||||| |||||||| ||||||    
T  37039121 aaatagagatatggtggtaaagaaatgattaatgtatattgaaatatgaaaggggtcttat 37039061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 27341495 - 27341344
Alignment:
Q  12 ttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaataaataagga 111  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||| |  ||| ||||||||| ||||| | |||| ||||||| |||||||||||    
T  27341495 ttattgttttacatgtttatcctttatgaaagagaattagtggatgtttttataaagcatttattatttattgtataaaactatgcaacataaataagga 27341396  T
Q  112 tataatggtaaagaaataatcaatgtgtattgaaatttgaaagggatcttat 163  Q
    |||| ||||||||||||||| |||    |||||||||||||| | |||||||    
T  27341395 tatagtggtaaagaaataattaatacacattgaaatttgaaatgaatcttat 27341344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 36034782 - 36034735
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaatta 50  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  36034782 tgacaattgttattgttttacaagtttaccctttatgagagagaatta 36034735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 34432112 - 34432155
Alignment:
Q  94 atgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||||||||||||||||||||| ||||||||||||||| |||||    
T  34432112 atgcaaaataaataaggatatattggtaaagaaataattaatgt 34432155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 12873659 - 12873591
Alignment:
Q  69 tatttattatatattgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    ||||||||||  |||| ||||||  ||||||||||||||||| |||| || |||||||||||| |||||    
T  12873659 tatttattattgattgaagaaaaagatgcaaaataaataaggttatattgataaagaaataataaatgt 12873591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 7475212 - 7475300
Alignment:
Q  20 ttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaataaataa 108  Q
    |||||| |||||| ||||  ||||| |||||||  |||||||||    |||||||||||||||||||||||| | | ||| ||||||||    
T  7475212 ttacatatttaccttttaaaaaagataattagttaatgttttcatagtgtatttattatatattgcagaaaaatttccaacataaataa 7475300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 30858076 - 30858020
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  30858076 attgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataattaatgt 30858020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 41422650 - 41422594
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  41422650 attgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataattaatgt 41422594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 41494521 - 41494577
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  41494521 attgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataattaatgt 41494577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 24154405 - 24154243
Alignment:
Q  1 gctgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||   ||||||||||||||||||||||||| |||||||     
T  24154405 gctgacaattgttattgttttacatgtttaccctttatgaaagagaattaatggatgctttcatagagtatttattatatattgcagaaaaatatgcaac 24154306  T
Q  101 ataaataaggatataatggtaaagaaataatcaatgtgtattgaaatttgaaagggatcttat 163  Q
    ||||||| ||||||| ||||||| ||||||  |||||  || |||||||| || || ||||||    
T  24154305 ataaatagggatatagtggtaaataaataactaatgtacatcgaaatttggaatgggtcttat 24154243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 45789273 - 45789406
Alignment:
Q  4 gacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaata 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  || |||| |    |||||| ||||||||||||||||| ||||||| |||    
T  45789273 gacaattgttattgttttacatgtttaccctttatgaaagagaattagttaatatttttatggcgtatttgttatatattgcagaaaaatatgcaacata 45789372  T
Q  104 aataaggatataatggtaaagaaataatcaatgt 137  Q
     |||||||||||||| |||| ||||||| |||||    
T  45789373 tataaggatataatgataaaaaaataattaatgt 45789406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 22129631 - 22129768
Alignment:
Q  18 ttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaataaataaggatataat 117  Q
    |||||||||||||||||||| ||||||||||||||  || ||||||  || |||||| |||||||||| | ||| ||||||| ||||||| |||||||      
T  22129631 ttttacatgtttaccctttaggaaagagaattagttaattttttcacaaaatatttaatatatattgctgcaaaatatgcaatataaatagggatataga 22129730  T
Q  118 ggtaaagaaataatcaatgtgtattgaaatttgaaagg 155  Q
    |||||||||||||| |||||  |||||||||| |||||    
T  22129731 ggtaaagaaataattaatgtacattgaaatttaaaagg 22129768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 30783893 - 30783731
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtat---ttattatatattgcagaaaattatgcaa 99  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||||||| |||||||| |   |||||   | ||||||||||||| |||| |||||||    
T  30783893 tgacaattgttattgttttatatgtttatcctttataaaagagaattagtggatgtttttatagagtattaataattatatattgca-aaaaatatgcaa 30783795  T
Q  100 aataaataaggatataatggtaaagaaataatcaatgtgtattgaaatttgaaagggatcttat 163  Q
     ||||||| || |||| ||||||||||||||  ||| |  |||||||||| |||  ||||||||    
T  30783794 cataaatagggttatagtggtaaagaaataaataatatacattgaaatttaaaaatgatcttat 30783731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 7205362 - 7205203
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaat 102  Q
    ||||||||  |||||||||||| |||||||||||| || ||| ||| |||  || ||||||   ||||||||| | |||||| |||||| |||| || ||    
T  7205362 tgacaatttctattgttttacaagtttaccctttaggagagataataagttaatattttcatagagtatttatcacatattgtagaaaaatatgtaatat 7205263  T
Q  103 aaataaggatataatggtaaagaaataatcaatgtgtattgaaatttgaaagggatcttat 163  Q
    ||||| || |||| ||||||||||||||| |||||   |||||||||||||||| ||||||    
T  7205262 aaataggggtatattggtaaagaaataattaatgt-acttgaaatttgaaaggggtcttat 7205203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 7325984 - 7326040
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgtt 59  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||    
T  7325984 tgacaattgttattgttttacatatttaccctttatgaaagagaattacttgatgtt 7326040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 38613545 - 38613489
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| |||||| |||||||||||||||||| |||  ||||||||||||||| |||||    
T  38613545 attgaagaaaaatatgcaaaataaataagggtatgttggtaaagaaataattaatgt 38613489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 24073013 - 24073075
Alignment:
Q  69 tatttattatatattgcagaaaattatgcaaaataaataaggatataatggtaaagaaataat 131  Q
    ||||||||||  |||| ||||||  ||||||||||||||||| |||  |||||||||||||||    
T  24073013 tatttattattgattgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataat 24073075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 30010763 - 30010800
Alignment:
Q  94 atgcaaaataaataaggatataatggtaaagaaataat 131  Q
    |||||||||||||||||||||  |||||||||||||||    
T  30010763 atgcaaaataaataaggatatgttggtaaagaaataat 30010800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 53564260 - 53564305
Alignment:
Q  86 agaaaattatgcaaaataaataaggatataatggtaaagaaataat 131  Q
    |||||| |||||||||||||||||| |||  |||||||||||||||    
T  53564260 agaaaaatatgcaaaataaataagggtatgttggtaaagaaataat 53564305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 6656643 - 6656699
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  |||||||||||||||||| ||| || |||||||||||| |||||    
T  6656643 attgaagaaaaagatgcaaaataaataaggacatattgataaagaaataattaatgt 6656699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 13498385 - 13498441
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  13498385 attgaagaaaaagatgcaaaataaataagggtatgttggtaaagaaataattaatgt 13498441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 23390247 - 23390303
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  23390247 attgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataattaatgt 23390303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 32684735 - 32684679
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  32684735 attgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataattaatgt 32684679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 39797572 - 39797516
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  39797572 attgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataattaatgt 39797516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 1083553 - 1083675
Alignment:
Q  34 tttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatca 133  Q
    ||||||||||||||||||| ||||||||||   ||||||||||| ||||||||||||| ||||||| ||||||| ||||| |||||||||||| |||| |    
T  1083553 tttatgaaagagaattagtggatgttttcatagagtatttattaaatattgcagaaaaatatgcaacataaatagggatacaatggtaaagaattaatta 1083652  T
Q  134 atgtgtattgaaatttgaaaggg 156  Q
    ||||  |||||||||||||||||    
T  1083653 atgtacattgaaatttgaaaggg 1083675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 1086199 - 1086321
Alignment:
Q  34 tttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatca 133  Q
    ||||||||||||||||||| ||||||||||   ||||||||||| ||||||||||||| ||||||| ||||||| ||||| |||||||||||| |||| |    
T  1086199 tttatgaaagagaattagtggatgttttcatagagtatttattaaatattgcagaaaaatatgcaacataaatagggatacaatggtaaagaattaatta 1086298  T
Q  134 atgtgtattgaaatttgaaaggg 156  Q
    ||||  |||||||||||||||||    
T  1086299 atgtacattgaaatttgaaaggg 1086321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 1082204 - 1082324
Alignment:
Q  34 tttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatca 133  Q
    ||||||||| ||||||||| ||||||||||  ||||||| |||| ||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||| |    
T  1082204 tttatgaaaaagaattagtggatgttttcataaagtatt-attaaatattgccgaaaaatatgcaacataaatagggatataatggtaaagaaataatta 1082302  T
Q  134 atgtgtattgaaatttgaaagg 155  Q
    |||| |||||||||||||||||    
T  1082303 atgtatattgaaatttgaaagg 1082324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 1084843 - 1084963
Alignment:
Q  34 tttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatca 133  Q
    ||||||||| |||||||||  |||||||||  ||||||| |||| ||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||| |    
T  1084843 tttatgaaaaagaattagtgaatgttttcataaagtatt-attaaatattgccgaaaaatatgcaacataaatagggatataatggtaaagaaataatta 1084941  T
Q  134 atgtgtattgaaatttgaaagg 155  Q
    |||| |||||||||||||||||    
T  1084942 atgtatattgaaatttgaaagg 1084963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 8217618 - 8217674
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  |||||||||||||||||||||  ||||||||||||||| |||||    
T  8217618 attgaagaaaaaaatgcaaaataaataaggatatgttggtaaagaaataattaatgt 8217674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 6418551 - 6418607
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  6418551 attgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataattaatgt 6418607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 8345378 - 8345322
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||||| || || |||||||||||| |||||    
T  8345378 attgaagaaaaagatgcaaaataaataaggatgtattgataaagaaataattaatgt 8345322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 22710404 - 22710348
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  22710404 attgaagaaaaaaatgcaaaataaataagggtattttggtaaagaaataattaatgt 22710348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 27581524 - 27581468
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||| |||||  ||||||||||||||| |||||    
T  27581524 attgaagaaaaagatgcaaaataaataaagatatgttggtaaagaaataattaatgt 27581468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 34258626 - 34258542
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcag 87  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||||||||||    
T  34258626 tgacaattattattgttttacatgtttatcctttatgaaagagaattagttgatgttttcattgagtatttattatatattgcag 34258542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 29999995 - 29999846
Alignment:
Q  13 tattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagta-agtatttattatatattgcagaaaattatgcaaaataaataagga 111  Q
    ||||||||||||| |||| ||||||||||||| ||||||  ||||||||| ||| | |||||||||||||||| | |||| ||||||| |||||||||||    
T  29999995 tattgttttacatatttatcctttatgaaaga-aattagctgatgttttc-gtagaatatttattatatattgtataaaaatatgcaacataaataagga 29999898  T
Q  112 tataatggtaaagaaataatcaatgtgtattgaaatttgaaagggatcttat 163  Q
    |||| || |||||||||||| ||| |  ||| ||||||||||||| ||||||    
T  29999897 tatattgataaagaaataattaatctacattaaaatttgaaagggttcttat 29999846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 16285077 - 16285145
Alignment:
Q  69 tatttattatatattgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||||||| | ||||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  16285077 tatttattgtttattgaagaaaaagatgcaaaataaataagggtatgttggtaaagaaataattaatgt 16285145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 21069775 - 21069719
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  21069775 attgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataattaatgt 21069719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 34258533 - 34258505
Alignment:
Q  67 agtatttattatatattgcagaaaattat 95  Q
    |||||||||||||||||||||||||||||    
T  34258533 agtatttattatatattgcagaaaattat 34258505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 41687012 - 41687068
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| |||||| |||||||||||||||||| |||  | ||||||||||||| |||||    
T  41687012 attgaagaaaaatatgcaaaataaataagggtatgttagtaaagaaataattaatgt 41687068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 11354769 - 11354648
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgc----agaaaattatgca 98  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||| | ||| |||||||  ||||||||||||||||| |    | |||| ||||||    
T  11354769 tgacaattgttattgttttacatgtttaccatttataaaagagaatta-tggatattttcag--agtatttattatatattacaaaaaaaaaaatatgca 11354673  T
Q  99 aaataaataaggatataatggtaaa 123  Q
    | ||||||| ||||||| |||||||    
T  11354672 acataaatagggatatagtggtaaa 11354648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 55000730 - 55000612
Alignment:
Q  34 tttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatca 133  Q
    ||||||||| ||||| ||||||||||||    || ||||||| ||||||||||||||| ||||||| ||||||  ||||||||||||||||||||| | |    
T  55000730 tttatgaaaaagaatgagtagatgttttatagaa-tatttat-atatattgcagaaaaatatgcaatataaattgggatataatggtaaagaaatagtta 55000633  T
Q  134 atgtgtattgaaatttgaaag 154  Q
    ||||  ||| |||||||||||    
T  55000632 atgtacattaaaatttgaaag 55000612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 51972117 - 51972225
Alignment:
Q  46 aattagtagatgttttcagtaagtatttattatatattgcagaaa-attatgcaaaataaataaggatataatggtaaagaaataatcaatgtgtattga 144  Q
    ||||||| |||||||||    |||||||||||||||||||| ||| |  || ||| ||||||| ||||||| ||||| |||||||||||||||  ||| |    
T  51972117 aattagttgatgttttcctagagtatttattatatattgcataaataaaatacaacataaatagggatatagtggtacagaaataatcaatgtacattaa 51972216  T
Q  145 aatttgaaa 153  Q
    |||||||||    
T  51972217 aatttgaaa 51972225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 26495925 - 26496035
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaattatgcaaaat 102  Q
    ||||||||| |||||||||||||||||| ||||| | | ||||||||| |  || ||||||   ||||||||||| | || ||||||||  ||| || ||    
T  26495925 tgacaattgctattgttttacatgtttatcctttgtaagagagaattacttaatattttcaaggagtatttattaaagatggcagaaaaacatgtaacat 26496024  T
Q  103 aaataaggata 113  Q
    |||||||||||    
T  26496025 aaataaggata 26496035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 1111547 - 1111603
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  1111547 attgaagaaaaagatgcaaaataaataagggtatcttggtaaagaaataattaatgt 1111603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 2131496 - 2131556
Alignment:
Q  3 tgacaattgttattgttttacatgtttaccctttatgaaagagaattagtagatgttttca 63  Q
    ||||||||| ||||| ||||||  ||||||||||| || |||||||||||  |||||||||    
T  2131496 tgacaattgatattgctttacaaatttaccctttaggagagagaattagtttatgttttca 2131556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 12918737 - 12918793
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  12918737 attgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataattaatgt 12918793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 44561595 - 44561651
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  44561595 attgaagaaaaagatgcaaaataaataagggtatgttggtaaagaaataattaatgt 44561651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 48904162 - 48904218
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  48904162 attgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataattaatgt 48904218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 17105 - 17010
Alignment:
Q  38 tgaaagagaattagtagatgttttcagtaagtatttattatatattgcagaaaat---tatgcaaaataaataaggatataatggtaaagaaataa 130  Q
    ||||||| |||||||  |||||||||   |||||||||| |||||||||||||||   ||| ||| |||||||  |||||| ||||||| ||||||    
T  17105 tgaaagataattagtgtatgttttcatagagtatttattttatattgcagaaaataaatatacaacataaatagagatatagtggtaaataaataa 17010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 17602 - 17546
Alignment:
Q  81 attgcagaaaattatgcaaaataaataaggatataatggtaaagaaataatcaatgt 137  Q
    |||| ||||||  ||||||||||||||||| |||  ||||||||||||||| |||||    
T  17602 attgaagaaaaaaatgcaaaataaataagggtatgttggtaaagaaataattaatgt 17546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University