View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8931_low_35 (Length: 303)
Name: NF8931_low_35
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 107 - 274
Target Start/End: Original strand, 13026567 - 13026734
Alignment:
| Q |
107 |
agttacattcttcatactctcaccaaccgattttgtaagagtaagttaggactaatataaagtcttacggtggctacaagttcacaatattcgacttcaa |
206 |
Q |
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| T |
13026567 |
agttacattcttcatactctcaccaaccgattttgtaagagtaagttaggactaatataaagtcttacggtggctacaagttcacaatattcgacttcaa |
13026666 |
T |
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| Q |
207 |
acgaggagggagatacaatggtttatttctttgacttctatgaaatgggggaggtgtcagggaagata |
274 |
Q |
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| T |
13026667 |
acgaggagggagatacaatggtttatttctttgacttctatgaaatgggagagttgtcaaggaagata |
13026734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 107 - 274
Target Start/End: Original strand, 13096751 - 13096918
Alignment:
| Q |
107 |
agttacattcttcatactctcaccaaccgattttgtaagagtaagttaggactaatataaagtcttacggtggctacaagttcacaatattcgacttcaa |
206 |
Q |
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| T |
13096751 |
agttacattcttcatactctcaccaaccgattttgtaagagtaagttaggactaatataaagtcttacggtggctacaagttcacaatattcgacttcaa |
13096850 |
T |
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| Q |
207 |
acgaggagggagatacaatggtttatttctttgacttctatgaaatgggggaggtgtcagggaagata |
274 |
Q |
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| T |
13096851 |
acgaggagagagatacaatgatttatttctttgacttctatgaaatgggagagttgtcaaggaagata |
13096918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 13024410 - 13024478
Alignment:
| Q |
17 |
ccatttatatacacgcaccaagctacattgataaaagataaggtatgattaatgtttataatgagatgt |
85 |
Q |
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| T |
13024410 |
ccatttatatacacgcaccaagctacattgataaaagataaggtatgattagtgtttataatgagatgt |
13024478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 13094596 - 13094662
Alignment:
| Q |
19 |
atttatatacacgcaccaagctacattgataaaagataaggtatgattaatgtttataatgagatgt |
85 |
Q |
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| T |
13094596 |
atttatatacacgcaccaagctacattgataaaagataaggtatgattagtgtttataatgagatgt |
13094662 |
T |
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