View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8931_low_37 (Length: 292)
Name: NF8931_low_37
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 2677454 - 2677713
Alignment:
| Q |
13 |
attattcttcaatttcgaaacaaccaaatagtagaagacgagataacatgcataattagggattctttaaggactcaatcccttgtcgtaccttgatatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2677454 |
attattcttcaatttcgaaacaaccaaatagtagaagacgagataacatgcataattagggattctttaaggactcaatcccttgtcgtaccttgatatg |
2677553 |
T |
|
| Q |
113 |
atgtgtgtagagtttacctattcaatagagaaatttcaaattattcnnnnnnnnnnnnnnnnnnnnnntagagaagtttcaaatgtttcataatcattta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2677554 |
atgtgtgtagagtttacctattcaatagagaaatttcaaattattc-----aaaaataaaataaaaaatagagaagtttcaaatgtttcataatcattta |
2677648 |
T |
|
| Q |
213 |
gctggatggaaagctagctattgaatttggctgagcatatattacattgttcgaaccagctattt |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2677649 |
gctggatggaaagctagctattgaatttggctgagcatatattacattgttcgaaccagctattt |
2677713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University