View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8931_low_41 (Length: 274)
Name: NF8931_low_41
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 6447558 - 6447400
Alignment:
| Q |
1 |
atgactatcccatctaaacattattgaaaacacgttcatttttattttgaaggttagttcaattgtgggaaagaacatcctccttgtcccattaggttag |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6447558 |
atgactatctcatctaaacattattgaaaacacgttcatttttattttgaaggttagttcaattgtgggaaagaacatcctccttgtcccattaggttag |
6447459 |
T |
|
| Q |
101 |
ttcataaattcatccttcttccaattttcaattcattaataaagatttgatcataagag |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6447458 |
ttcataaattcatccttcttccaattttcaattcattaataaagatttgatcataagag |
6447400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 6447012 - 6446908
Alignment:
| Q |
154 |
taagagacagaaaccaaaaacataattcaaaattggaagattgaattcaatgtaattgtagtggcaaacaagatctaacacggcatatctaaatatagta |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6447012 |
taagagacagaaaccaaaaacataattcaaaattggaagattgaattcaatgtaattgtagtggtaaacaagatctaacacggcatatctaaatatagta |
6446913 |
T |
|
| Q |
254 |
actat |
258 |
Q |
| |
|
||||| |
|
|
| T |
6446912 |
actat |
6446908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University