View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8931_low_42 (Length: 272)

Name: NF8931_low_42
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8931_low_42
NF8931_low_42
[»] scaffold0083 (1 HSPs)
scaffold0083 (22-272)||(49981-50231)
[»] chr3 (29 HSPs)
chr3 (1-186)||(10363950-10364135)
chr3 (1-272)||(10088433-10088707)
chr3 (1-272)||(10195316-10195590)
chr3 (1-272)||(9838504-9838778)
chr3 (1-272)||(9849382-9849656)
chr3 (1-272)||(10375997-10376271)
chr3 (1-269)||(11768880-11769151)
chr3 (1-272)||(10580244-10580518)
chr3 (1-272)||(10434196-10434470)
chr3 (1-272)||(10076909-10077186)
chr3 (1-266)||(11131178-11131446)
chr3 (1-181)||(10889043-10889223)
chr3 (1-71)||(10126775-10126845)
chr3 (1-71)||(10184089-10184159)
chr3 (1-71)||(10260545-10260615)
chr3 (1-263)||(8860938-8861203)
chr3 (1-71)||(10031850-10031920)
chr3 (1-186)||(11160169-11160354)
chr3 (14-213)||(13332606-13332808)
chr3 (1-181)||(11149006-11149186)
chr3 (22-213)||(13160682-13160876)
chr3 (1-71)||(10663373-10663443)
chr3 (16-86)||(10500385-10500455)
chr3 (14-213)||(13170733-13170935)
chr3 (16-85)||(10527168-10527237)
chr3 (14-213)||(13289367-13289569)
chr3 (14-186)||(13343821-13343993)
chr3 (16-78)||(11782173-11782235)
chr3 (16-78)||(10517301-10517363)
[»] chr2 (1 HSPs)
chr2 (4-272)||(26906540-26906811)
[»] chr8 (2 HSPs)
chr8 (28-272)||(44957888-44958135)
chr8 (28-86)||(11484846-11484904)
[»] scaffold0002 (2 HSPs)
scaffold0002 (14-213)||(146104-146306)
scaffold0002 (14-213)||(136053-136255)
[»] chr6 (1 HSPs)
chr6 (14-202)||(31679898-31680089)
[»] chr4 (1 HSPs)
chr4 (22-86)||(17853120-17853184)


Alignment Details
Target: scaffold0083 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 49981 - 50231
Alignment:
Q  22 tcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaagtatatctt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49981 tcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaagtatatctt 50080  T
Q  122 ttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatagtttttaaaaggagatggaaagaagttcatcacctg 221  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  50081 ttcttttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatagtttttaaaagaagatgaaaagaagttcatcacctg 50180  T
Q  222 ataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatc 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50181 ataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatc 50231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 10363950 - 10364135
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10363950 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 10364049  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatag 186  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10364050 tttgcaaacgaagtatatcttttctcttttcaaaatgttgcaggctttcacacatgatcttcatctgggaattgatctctctatag 10364135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 10088707 - 10088433
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| | ||||||    
T  10088707 atgttcattattgtctctttatcatccttcctacccaccatgacagattcatttaccaccgaacttgaaggagttctatgtgaaacccttgcgattttag 10088608  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccat---agtttttaaaagg 197  Q
    |||||| || ||||||||||||  ||| | |||| | ||||| ||||||||||||||||||||| || |||||||||||||  |   || | ||||||||    
T  10088607 tttgcagaccaagtatatctttattctgtgcaaacaattgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaagctattaaaagg 10088508  T
Q  198 agatggaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatc 272  Q
    ||||| || ||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  10088507 agatgaaaggaagttcatcacctgataacttttgttttgagcttgtgcattctccaccttgcatcgaagggaatc 10088433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 10195590 - 10195316
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||    
T  10195590 atgttcattattgtctctttatcatcctttctacccaccatgacagattcatttaccactgaacttgaaggagttctatgtgaaacccttgcgtttttag 10195491  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccat---agtttttaaaagg 197  Q
    |||||| || ||||||||||||  ||| | |||| | ||||| ||||||||||||||||||||| || |||||||||||||  |   || | ||||||||    
T  10195490 tttgcagaccaagtatatctttattctgtgcaaacaattgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaagctattaaaagg 10195391  T
Q  198 agatggaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatc 272  Q
    ||||| || ||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  10195390 agatgaaaggaagttcatcacctgataacttttgttttgagcttgtgcattctccaccttgcatcgaagggaatc 10195316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 9838778 - 9838504
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| ||||| || |  |||||||    
T  9838778 atgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactctagcacttttag 9838679  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctct---ccatagtttttaaaagg 197  Q
    ||||||||| ||||||||||||  ||| | || ||||||||| ||| |||||||||||||||||||||||||||||||||     | |  | ||||||||    
T  9838678 tttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcacacatgatcttcatctgggaattgatctctttgtaaaaactattaaaagg 9838579  T
Q  198 agatggaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatc 272  Q
    ||| | || |||||||  |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  9838578 agaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatc 9838504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 9849656 - 9849382
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| ||||| || |  |||||||    
T  9849656 atgttcattattgtctctttgtcacccttcctacccaccacgacagattcatttacccctgaactagaaggtgttctacgagaaactctagcacttttag 9849557  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctct---ccatagtttttaaaagg 197  Q
    ||||||||| ||||||||||||  ||| | || ||||||||| ||| |||||||||||||||||||||||||||||||||     | |  | ||||||||    
T  9849556 tttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcacacatgatcttcatctgggaattgatctctttgtaaaaactattaaaagg 9849457  T
Q  198 agatggaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatc 272  Q
    ||| | || |||||||  |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  9849456 agaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatc 9849382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 10375997 - 10376271
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    |||||||    
T  10375997 atgttcattatagtgtctttatcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgagaaactctaccacttttag 10376096  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccat---agtttttaaaagg 197  Q
    |||||| || ||||||||||||   || | |||| | ||||||||| |||||||||| |||||| || |||||||||||||  |   || | ||||||||    
T  10376097 tttgcagaccaagtatatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgttaaaagg 10376196  T
Q  198 agatggaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatc 272  Q
    ||| | || |||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  10376197 agaagaaaggaagttcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatc 10376271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 11769151 - 11768880
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |  |||||||    
T  11769151 atgttcattattgtctctttgtcattcttcctacccactatgacagattcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttag 11769052  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccata---gtttttaaaagg 197  Q
    |||||||||  | |||||||||  | | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||||||    
T  11769051 tttgcaaacctaatatatctttattttgtgcaaaaagttgcaggctttcacacatgatcttcatatgggaattgatctctccatagatgtttttaaaagg 11768952  T
Q  198 agatggaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcaggga 269  Q
     |||| ||  ||||||  |||||||| | ||||| ||  ||||| |   ||||||| ||||||||| |||||    
T  11768951 ggatgaaagtaagttccacacctgattagttttgtttctagcttgtttcttctccatcttgcatcggaggga 11768880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 10580518 - 10580244
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||||||||| |||| | | ||||| || |  || ||||    
T  10580518 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcgttaaacacagaacttgaaggagttccatgagaaactctagcactcttag 10580419  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatagt---ttttaaaagg 197  Q
    ||||||||| ||| | ||||||    ||| |||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||    | ||||||||    
T  10580418 tttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatcttcatctgggaattgatctctctatagaagctattaaaagg 10580319  T
Q  198 agatggaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatc 272  Q
    ||| | || |||||||  |||||||| | ||||| ||||||||| || |||||||||||||||||||||||||||    
T  10580318 agaagaaaggaagttccacacctgattagttttgttttgagcttgtgtattctccaccttgcatcgcagggaatc 10580244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 10434196 - 10434470
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    |||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||| |||||||||||  ||||| | ||||| ||    ||||| |    
T  10434196 atgttcattattgtctctttgtcatccttccttccaaccatgaaagattcattgaccacagaacttgaaggatttctatgagaaactctcccacttttgg 10434295  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatag---tttttaaaagg 197  Q
    |||||| || ||||||||||||  ||| | |||||||||||| ||||||||||||||||||||| || |||||||||||||  |||    | ||||||||    
T  10434296 tttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaaactattaaaagg 10434395  T
Q  198 agatggaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatc 272  Q
    ||||| || |||||||| |||||||| | ||||| ||||||| | || ||||||||||||| |||| ||||||||    
T  10434396 agatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccaccttggatcgaagggaatc 10434470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 10077186 - 10076909
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaa---acccttgtgcttt 97  Q
    ||||||||||||||||||||||||  || | |||| |||||  ||||||||||||||||||||||||||||||||||||| |||   || || |   |||    
T  10077186 atgttcattattgtctctttgtcacgctccataccaaccatctcagattcatttaccactgaacttgaaggtgttctacgagaaattactctagcaattt 10077087  T
Q  98 tagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccat---agtttttaaa 194  Q
    ||||||||| || ||||| ||||||  ||| | |||| | |||||  |||||||||||||||||| | || ||||||||||||   |   || | |||||    
T  10077086 tagtttgcagaccaagtacatctttattctgtgcaaacaattgcaacctttcacacatgatcttcgtttgagaattgatctctttgtagaagctattaaa 10076987  T
Q  195 aggagatggaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatc 272  Q
    |||||||| || |||||||| |||||||| | ||||| ||||||||| |||||||||||||||||||||||| |||||    
T  10076986 aggagatgaaaggaagttcaacacctgattagttttgttttgagcttgtgcattctccaccttgcatcgcagtgaatc 10076909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 11131178 - 11131446
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    |||||| |||||||||||||||||||||| ||||| |||||||  |||||||| ||||| ||||| |||||||||||| |  |||  || |  |||||||    
T  11131178 atgttcgttattgtctctttgtcatcctttctaccaaccatgaatgattcattaaccacagaactagaaggtgttctatggaaaattctagcacttttag 11131277  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccata---gtttttaaaagg 197  Q
    |||| |||| ||| ||||||||  | | | |||||| ||||||| | ||||||||| |||| || ||||||||||||||||||||   ||||||||||||    
T  11131278 tttgtaaaccaaggatatctttgttttgtgcaaaaatttgcaggttgtcacacatggtcttaatttgggaattgatctctccatagatgtttttaaaagg 11131377  T
Q  198 agatggaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcag 266  Q
    ||| | || |||||||   ||||||| | ||||| ||  ||||| || |||||||||||||||||||||    
T  11131378 agaagaaaggaagttccagacctgattagttttgtttgcagcttgtgtattctccaccttgcatcgcag 11131446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 10889223 - 10889043
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    |||||||||||||||||||| ||||| || ||||| ||||||||||||||||| || |||||||||||||| |||||||| |||||  |     ||||||    
T  10889223 atgttcattattgtctctttatcatcatttctaccaaccatgacagattcattaactactgaacttgaaggggttctacgagaaactttaccaattttag 10889124  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctc 181  Q
    ||||||||| ||| ||||||||    | | |||||||||||| ||| | ||||||||||||||| ||||||||||||||||    
T  10889123 tttgcaaaccaaggatatctttatgttgtgcaaaaagttgcaagctattacacatgatcttcatttgggaattgatctctc 10889043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10126845 - 10126775
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaagg 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10126845 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaagg 10126775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10184159 - 10184089
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaagg 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10184159 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaagg 10184089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10260615 - 10260545
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaagg 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10260615 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaagg 10260545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 8861203 - 8860938
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    |||||||||| ||||||||| ||||| || ||||| ||||||||||||||||| || |||||||||||||| |||||||| |||||  |     ||||||    
T  8861203 atgttcattactgtctctttatcatcatttctaccaaccatgacagattcattaactactgaacttgaaggggttctacgagaaactttaccaattttag 8861104  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccat---agtttttaaaagg 197  Q
    ||||||||| ||| ||||||||    | | | |||| ||||| ||| ||||||||||||||||| ||||||||||||||||  |   || | ||||||||    
T  8861103 tttgcaaaccaaggatatctttatgttgtgcgaaaatttgcaagctatcacacatgatcttcatttgggaattgatctctctgtagaaggtgttaaaagg 8861004  T
Q  198 agatggaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcg 263  Q
    ||| | || |||||||  |||||||| | ||||| ||  ||||| || || |||||||||||||||    
T  8861003 agaagaaaggaagttccacacctgattagttttgtttgcagcttgtgtatcctccaccttgcatcg 8860938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10031920 - 10031850
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaagg 71  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10031920 atgttcattattgtctctttgtcatccttcctacccaccatgagagattcatttaccactgaacttgaagg 10031850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 11160169 - 11160354
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    |||||||||||||||||||| ||||| || ||||| |||||||||||| |||| || |||||||||||||| |||||||| |||||  |     |||||     
T  11160169 atgttcattattgtctctttatcatcatttctaccaaccatgacagatgcattaactactgaacttgaaggggttctacgagaaactttaccaattttac 11160268  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatag 186  Q
    ||||||||| ||| ||||||||    | | | |||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||    
T  11160269 tttgcaaaccaaggatatctttatgttgtgcgaaaagttgcaagctatcacacatgatcttcatttgggaattgatctctctatag 11160354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 13332808 - 13332606
Alignment:
Q  14 tctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaag 113  Q
    ||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||| |||||| | ||||| || | |||   ||||||||| | |||    
T  13332808 tctctttatcatccttcctaccaaccataacagattcatttaccattgaacttgaaggcgttctaagagaaactctcgcgctcacagtttgcaagccaag 13332709  T
Q  114 tatatcttttctctt-ttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatag---tttttaaaaggagatggaaagaa 209  Q
     ||||| | ||| || | ||||||||||||| |||| |||||| |||||||| || ||||||||||||||||||   |||||||||||||| | |||||     
T  13332708 aatatc-tctctgttgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagacgaaaagag 13332610  T
Q  210 gttc 213  Q
    ||||    
T  13332609 gttc 13332606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 11149006 - 11149186
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttag 100  Q
    |||||| ||||| |||||||||||||||| ||||| |||||||  |||||||| ||||| ||||| |||||||||||| |  |||  || |  |||||||    
T  11149006 atgttcgttattatctctttgtcatcctttctaccaaccatgaatgattcattaaccacagaactagaaggtgttctatggaaaattctagcacttttag 11149105  T
Q  101 tttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctc 181  Q
    ||||||||| ||| ||||||||  | | | |||||| ||||||| | ||||||||| ||||||| ||||||||||||||||    
T  11149106 tttgcaaaccaaggatatctttgttttgtgcaaaaatttgcaggttgtcacacatggtcttcatttgggaattgatctctc 11149186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 13160876 - 13160682
Alignment:
Q  22 tcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaagtatatctt 121  Q
    |||||||||||||| ||||| |||||||||||||||| |||||||||||| |||||  | ||||| || | |||   ||||||||| | ||| ||||||     
T  13160876 tcatccttcctaccaaccataacagattcatttaccattgaacttgaaggcgttcttagagaaactctcgcgctcacagtttgcaagccaaggatatctc 13160777  T
Q  122 ttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatag---tttttaaaaggagatggaaagaagttc 213  Q
    ||   | | ||||||||||||| |||| |||||| |||||||| || ||||||||||||||||||   |||||||||||||||| ||||| ||||    
T  13160776 tttgttgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttc 13160682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10663443 - 10663373
Alignment:
Q  1 atgttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaagg 71  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  10663443 atgttcattattgtctctttgtcacccttcctacccaccatgagagattcatttaccactgaacttgaagg 10663373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 10500455 - 10500385
Alignment:
Q  16 tctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaac 86  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10500455 tctttatcatcattcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgagaaac 10500385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 13170935 - 13170733
Alignment:
Q  14 tctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaag 113  Q
    ||||||| ||||||||||| || ||||| |||||||||||||||| |||||||||||| |||||  | ||||| ||   |||   ||||||||| | |||    
T  13170935 tctctttatcatccttccttccaaccataacagattcatttaccattgaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaag 13170836  T
Q  114 tatatcttttctctttt-caaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatag---tttttaaaaggagatggaaagaa 209  Q
     |||||| | || || | ||||||||||||| |||| |||||| |||||||| || ||||||||||||||||||   |||||||||||| ||| |||||     
T  13170835 gatatctct-ctgttgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagag 13170737  T
Q  210 gttc 213  Q
    ||||    
T  13170736 gttc 13170733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 10527237 - 10527168
Alignment:
Q  16 tctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaa 85  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||    
T  10527237 tctttatcatcattcctacccacaatgacagattcatttaccactgaacttgaaggggttctacgagaaa 10527168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 13289569 - 13289367
Alignment:
Q  14 tctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaag 113  Q
    ||||||| |||||||||||||| ||||| ||||||| |||||||| |||||||||||| |||||| | ||||| ||    ||   ||||||||| | |||    
T  13289569 tctctttatcatccttcctaccaaccataacagatttatttaccattgaacttgaaggcgttctaagagaaactctccctctcacagtttgcaagccaag 13289470  T
Q  114 tatatcttttctctt-ttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatag---tttttaaaaggagatggaaagaa 209  Q
     ||||| | ||| || | ||||||| ||||| |||| |||||| |||||||| || ||||||||||||||||||    ||||||||||||||| |||||     
T  13289469 gatatc-tctctgttgtgcaaaaagctgcagcctttgacacataatcttcatttgtgaattgatctctccatagagagttttaaaaggagatgaaaagag 13289371  T
Q  210 gttc 213  Q
    ||||    
T  13289370 gttc 13289367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 13343993 - 13343821
Alignment:
Q  14 tctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaag 113  Q
    ||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||  | ||||| ||   |||   ||||||||| | |||    
T  13343993 tctctttatcatccttcctaccaaccataacagattcatttaccattgaacttgaaggtgttcttagagaaactctcccgctcacagtttgcaagccaag 13343894  T
Q  114 tatatcttttctctt-ttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatag 186  Q
     ||||| | ||| || | ||||||  ||||| |||| |||||| |||||||| || ||||||||||||||||||    
T  13343893 gatatc-tctctgttgtgcaaaaatctgcagcctttgacacataatcttcatttgtgaattgatctctccatag 13343821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 11782173 - 11782235
Alignment:
Q  16 tctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttcta 78  Q
    ||||| ||||| ||||||||||||| | |||||| ||||| ||||||||||||||| ||||||    
T  11782173 tctttatcatcattcctacccaccacgtcagattgatttagcactgaacttgaaggggttcta 11782235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 10517363 - 10517301
Alignment:
Q  16 tctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttcta 78  Q
    ||||| ||||| ||||||||||||| | |||||||||||| ||| ||||||||| | ||||||    
T  10517363 tctttatcatcattcctacccaccacgtcagattcatttagcaccgaacttgaaagggttcta 10517301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 272
Target Start/End: Complemental strand, 26906811 - 26906540
Alignment:
Q  4 ttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |  ||||||||||    
T  26906811 ttcattattgtctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgagaaactctagcacttttagttt 26906712  T
Q  104 gcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccat---agtttttaaaaggaga 200  Q
    |||||| ||| ||||||||    | | |||| | |||||||||||||||||| |||||||| || |||||||||||||  |   || | |||||||||||    
T  26906711 gcaaaccaaggatatctttatgttgtgcaaacaattgcaggctttcacacattatcttcatttgagaattgatctctctgtagaagctattaaaaggaga 26906612  T
Q  201 tggaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatc 272  Q
    || || |||||||| |||||||| | ||||| ||||||||| || |||||| || |||||||||||||||||    
T  26906611 tgaaaggaagttcaacacctgattagttttgttttgagcttgtgtattctcgactttgcatcgcagggaatc 26906540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 272
Target Start/End: Original strand, 44957888 - 44958135
Alignment:
Q  28 ttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaagtatatcttttctct 127  Q
    ||||| |||||||| | ||||||||| ||| |||||||||||||||||||| | ||||| || |  |||||||||| ||||| || |||||||||   ||    
T  44957888 ttcctgcccaccataatagattcattaacccctgaacttgaaggtgttctatgagaaactctagcacttttagtttccaaaccaattatatctttatgct 44957987  T
Q  128 tttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccat---agtttttaaaaggagatggaaagaagttcatcacctgata 224  Q
     | ||||||||||||||  ||||||||| |||||||| || ||||||||||||||||   |||||||||||||||||| || |||||||   |||||||     
T  44957988 gtgcaaaaagttgcagggattcacacataatcttcatttgagaattgatctctccatagaagtttttaaaaggagatgaaaggaagttccagacctgatt 44958087  T
Q  225 aattttgctttgagcttttgcattctccaccttgcatcgcagggaatc 272  Q
    | ||||| |   | ||| || ||||||||| ||||| |||||||||||    
T  44958088 agttttgttggcaacttgtgtattctccactttgcaacgcagggaatc 44958135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 11484904 - 11484846
Alignment:
Q  28 ttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaac 86  Q
    ||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| |||||    
T  11484904 ttccttcccaccataacagattcattcaccactgaacttgatggtgttctacgagaaac 11484846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 146104 - 146306
Alignment:
Q  14 tctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaag 113  Q
    ||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||| |||||  | ||||| ||   |||   ||||||||| | |||    
T  146104 tctctttatcatccttcctaccaaccataacagattcatttaccattgaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaag 146203  T
Q  114 tatatcttttctctt-ttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatag---tttttaaaaggagatggaaagaa 209  Q
     ||||| | ||| || | ||||||||||||| |||| |||||| |||||||| || ||||||||||||||||||   |||||||||||||||| |||||     
T  146204 gatatc-tctctgttgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagag 146302  T
Q  210 gttc 213  Q
    ||||    
T  146303 gttc 146306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 136053 - 136255
Alignment:
Q  14 tctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaag 113  Q
    ||||||| ||||||||||| || ||||| |||||||||||||||| |||||||||||| |||||  | ||||| ||   |||   ||||||||| | |||    
T  136053 tctctttatcatccttccttccaaccataacagattcatttaccattgaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaag 136152  T
Q  114 tatatcttttctctt-ttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatag---tttttaaaaggagatggaaagaa 209  Q
     ||||| | ||| || | ||||||||||||| |||| |||||| |||||||| || ||||||||||||||||||   |||||||||||| ||| |||||     
T  136153 gatatc-tctctgttgtgcaaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagag 136251  T
Q  210 gttc 213  Q
    ||||    
T  136252 gttc 136255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 31679898 - 31680089
Alignment:
Q  14 tctctttgtcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaag 113  Q
    ||||||| |||  ||||||||| ||||||| ||||| || ||| | ||||||||||||||||||| |  |||||||    |||  ||||||||| | |||    
T  31679898 tctctttatcactcttcctaccaaccatgaaagattgatctactagtgaacttgaaggtgttctaagaaaaaccctaccacttacagtttgcaacccaag 31679997  T
Q  114 tatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccat---agtttttaaaaggagatg 202  Q
     |||||||||   | | |||||||||| || ||||||  |||  ||||||| |||||||||||||||||||   |||||| |||||||||||    
T  31679998 gatatctttttgttgtgcaaaaagttggagcctttcaatcatactcttcatttgggaattgatctctccatacaagttttgaaaaggagatg 31680089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 17853120 - 17853184
Alignment:
Q  22 tcatccttcctacccaccatgacagattcatttaccactgaacttgaaggtgttctacgtgaaac 86  Q
    ||||| ||||| || ||||||||||||||||||||||| ||||||||||| |||||||| |||||    
T  17853120 tcatcattccttcctaccatgacagattcatttaccacggaacttgaaggggttctacgagaaac 17853184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University