View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8931_low_5 (Length: 620)
Name: NF8931_low_5
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 24 - 453
Target Start/End: Complemental strand, 27643488 - 27643059
Alignment:
| Q |
24 |
tgcttgcaaaacaacatgtgtgggctgcagttacagaagatgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27643488 |
tgcttgcaaaacaacatgtgtgggctgcagttacagaagatgcgaagaaccaagctttcaattgcacaaatggtgatgttttcacttggaagagtatgtg |
27643389 |
T |
|
| Q |
124 |
gatgttgcttagtgaggtttttgatgttaagtttgtggagttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgg |
223 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27643388 |
gatgttgcttagtgaggtttttaatgttaagtttgtggagttgaatgacaaggaagagtttgatttggtggagttaatgcgtgataagggtgagatttgg |
27643289 |
T |
|
| Q |
224 |
gacttgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatg |
323 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
27643288 |
gacctgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaagcaacggtgccagttctgcggtttcagtttcaacatg |
27643189 |
T |
|
| Q |
324 |
tatctagtatgaacaagagtaagaactatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaact |
423 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27643188 |
tatctagtatgaacaaaagtaaggattatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagttgagggagatgaaact |
27643089 |
T |
|
| Q |
424 |
catatccttctaccaacgttgaattgcatt |
453 |
Q |
| |
|
|||| || ||||| ||| |||||||||||| |
|
|
| T |
27643088 |
catacccgtctacaaacattgaattgcatt |
27643059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 24 - 440
Target Start/End: Original strand, 50247403 - 50247819
Alignment:
| Q |
24 |
tgcttgcaaaacaacatgtgtgggctgcagttacagaagatgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtg |
123 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||||||| | | | ||||||||||| || ||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
50247403 |
tgctggcaaagcaacatgtgtgggctggagttacaaagaaagctaagaaccaagcatttaattgtacaaacggtgacattttcacttggaagagtatgtg |
50247502 |
T |
|
| Q |
124 |
gatgttgcttagtgaggtttttgatgttaagtttgtggagttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||| |||| || |||||||||||| | ||||| |||||||| ||||||||| ||||| |
|
|
| T |
50247503 |
gatgttgcttagtgaggtttttgatgttgagtttgttgagttggatgataaagaagagtttgatatcattgagttgatgcgtgacaagggtgaggtttgg |
50247602 |
T |
|
| Q |
224 |
gacttgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatg |
323 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||| ||||||||| | ||||| || | ||||||||||||||||||| |
|
|
| T |
50247603 |
gacttgattgtagagaaatatgggcttcataagaccaagttgaaggaaattgcttgctttgaagccatggtgccagttgtacggtttgagtttcaacatg |
50247702 |
T |
|
| Q |
324 |
tatctagtatgaacaagagtaagaactatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaact |
423 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| || |||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
50247703 |
tatctagtatgaacaagagtaaagattatgggtttttagagtatgctgatacgtttaagagtatcaaactctgggtggctaagctgagggagatgaaact |
50247802 |
T |
|
| Q |
424 |
catatccttctaccaac |
440 |
Q |
| |
|
||| ||| |||||||| |
|
|
| T |
50247803 |
tataccctcctaccaac |
50247819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 24 - 446
Target Start/End: Original strand, 50254540 - 50254962
Alignment:
| Q |
24 |
tgcttgcaaaacaacatgtgtgggctgcagttacagaagatgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtg |
123 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||| | | | |||||||||||||| ||||||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
50254540 |
tgctggcaaagcaacatgtatgggctgcagttacaaagaaggctaagaaccaagcgtttaattgcacaaatggtgacgttttcgcatggaagagtatgtg |
50254639 |
T |
|
| Q |
124 |
gatgttgcttagtgaggtttttgatgttaagtttgtggagttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgg |
223 |
Q |
| |
|
|| | ||||| || || ||||| ||||||||||||||| ||| |||| ||||||||||||||||||| | |||| |||||||||||||||||| ||||| |
|
|
| T |
50254640 |
gaaggtgctttgtaagacttttgctgttaagtttgtggatttggatgaaaaggaagagtttgatttggtgcagtttatgcgtgataagggtgaggtttgg |
50254739 |
T |
|
| Q |
224 |
gacttgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatg |
323 |
Q |
| |
|
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| || ||||| || | || ||||||||||||| || |
|
|
| T |
50254740 |
gatcagattgtggaggagtatggacttcataagaccaaattggaggaaattgcttgttttgatgccttggtgccagtttttcgatttgagtttcaacttg |
50254839 |
T |
|
| Q |
324 |
tatctagtatgaacaagagtaagaactatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaact |
423 |
Q |
| |
|
||||||||||||| |||||||| || |||| ||| ||||||||||| || |||||||| ||| | | |||||||||| ||||||||||||||||| || |
|
|
| T |
50254840 |
tatctagtatgaataagagtaaaaattatgagttttttgagtatgctgagacgtttaatagtgtgaaattctgggtgatgaagctgagggagatgaatct |
50254939 |
T |
|
| Q |
424 |
catatccttctaccaacgttgaa |
446 |
Q |
| |
|
|||| || ||||| ||| ||||| |
|
|
| T |
50254940 |
catacccatctacgaacattgaa |
50254962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 390 - 613
Target Start/End: Complemental strand, 27646328 - 27646102
Alignment:
| Q |
390 |
gattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaattgcattatctgtaataatattgttcgacttttatttcatctg |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27646328 |
gattctgggtggctaagctgagggagatgaaactcatacccttctaccaacattgaattgcattatctgtaataatattgttcgacttttatttcatctg |
27646229 |
T |
|
| Q |
490 |
tataccacaaaaacttttaataacagtca---nnnnnnnnctataaaccagtatcatctgcacgcaactgcagggactacttccattgagctgtatgttc |
586 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
27646228 |
tataccacaaaaacttttaataacagtcattttttttcttctataaaccagtatcatctgcacgcaactgcagagactactttcattgagctgtatgttc |
27646129 |
T |
|
| Q |
587 |
tcctcagtcccaacatattcctctgct |
613 |
Q |
| |
|
||||||||||||| ||||||| |||| |
|
|
| T |
27646128 |
ccctcagtcccaacgtattcctttgct |
27646102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University