View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8931_low_52 (Length: 252)
Name: NF8931_low_52
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6752984 - 6753222
Alignment:
| Q |
1 |
tgtcagtttgctatagttaaaaatttctggtgtaacctaggctatgaggattgtgcaatttctgaagctcgtggacactctggagggatatggatattaa |
100 |
Q |
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| T |
6752984 |
tgtcagttttctagagttaaaaatttctggtgtaacctaggctatgaggattgtgcaatttctgaagctcgtggacactctggagggatatggatattaa |
6753083 |
T |
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| Q |
101 |
aatctcaaaattgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaac |
200 |
Q |
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| T |
6753084 |
aatctcaaaattgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaac |
6753183 |
T |
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| Q |
201 |
tatttatgctagccctcaggttacaaatcgtgaccatct |
239 |
Q |
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| T |
6753184 |
tatttatgctagccctcaggttacaaatcgtgaccatct |
6753222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 1811548 - 1811312
Alignment:
| Q |
3 |
tcagtttgctatagttaaaaatttctggtgtaacctaggctatgaggattgtgcaatttctgaagctcgtggacactctggagggatatggatattaaaa |
102 |
Q |
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| T |
1811548 |
tcagttttctagagttaaaaatttctggtgtaacctaggctatgagaattgtgcaatttctgaagctcgtggacactctggaggtatatggatattaaaa |
1811449 |
T |
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| Q |
103 |
tctcaaaattgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaacta |
202 |
Q |
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| T |
1811448 |
tctcaaaattgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaacta |
1811349 |
T |
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| Q |
203 |
tttatgctagccctcaggttacaaatcgtgaccatct |
239 |
Q |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
1811348 |
tttatgctagccctcaggttacaaatcgtgatcatct |
1811312 |
T |
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