View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8931_low_53 (Length: 249)
Name: NF8931_low_53
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 6911846 - 6912068
Alignment:
| Q |
16 |
ggttcgactccacctggatccgacttatgtcaatcatgtttaagcatggtaaatagcactcatctttatctgtctggtaaatcaagttgtggcagcatgt |
115 |
Q |
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| T |
6911846 |
ggttcgactccacctggatccgacttatgtcaatcatgtttaagcatggcaattagcactcatctttatctgtctggtaaatcaagttgtggcagcatgt |
6911945 |
T |
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| Q |
116 |
aattcaatggaaaggcccagatacgtgttagaggtgtatgctataagagagtttaaaagcaggttactttcactttttgtgaattcatgtagaaatgatt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6911946 |
aattcaatggaaaggcccagatacgtgttagaggtgtatgctataagagagtttaaaagcaggctactttcactttttgtgaattcatgtagaaatgatt |
6912045 |
T |
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| Q |
216 |
tgattagaaatggtactgatgtc |
238 |
Q |
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| T |
6912046 |
tgattagaaatggtactgatgtc |
6912068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 6929390 - 6929490
Alignment:
| Q |
16 |
ggttcgactccacctggatccgacttatgtcaatcatgtttaagcatggtaaatagcactcatctttatctgtctggtaaatcaagttgtggcagcatgt |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |||| | || ||||||||||||| || |||| | |||||||||||||||| |||||| |
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| T |
6929390 |
ggttcgactccacctggatccgacttttgtcaatcatgtttatgcatagcaattagcactcatcttcatatgtccgctaaatcaagttgtggcggcatgt |
6929489 |
T |
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| Q |
116 |
a |
116 |
Q |
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| T |
6929490 |
a |
6929490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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