View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8931_low_56 (Length: 247)

Name: NF8931_low_56
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8931_low_56
NF8931_low_56
[»] chr7 (32 HSPs)
chr7 (3-238)||(8602142-8602377)
chr7 (3-209)||(8538204-8538410)
chr7 (1-187)||(8382692-8382878)
chr7 (12-208)||(8636138-8636334)
chr7 (1-238)||(29581606-29581843)
chr7 (3-208)||(8559501-8559706)
chr7 (1-207)||(8610083-8610289)
chr7 (1-238)||(29577434-29577674)
chr7 (1-208)||(8570477-8570684)
chr7 (1-208)||(8581866-8582073)
chr7 (64-208)||(7877528-7877672)
chr7 (1-208)||(8576492-8576699)
chr7 (1-208)||(8647043-8647250)
chr7 (1-184)||(8585525-8585708)
chr7 (1-208)||(17268105-17268312)
chr7 (1-209)||(6789678-6789886)
chr7 (1-208)||(8545799-8546005)
chr7 (1-190)||(13333269-13333458)
chr7 (1-184)||(8628698-8628881)
chr7 (69-184)||(8590872-8590987)
chr7 (1-198)||(8659529-8659726)
chr7 (1-190)||(10494187-10494376)
chr7 (1-190)||(8654616-8654805)
chr7 (1-199)||(17260407-17260605)
chr7 (74-181)||(8667658-8667765)
chr7 (78-184)||(3147515-3147621)
chr7 (74-181)||(8671452-8671559)
chr7 (74-184)||(27830694-27830804)
chr7 (102-183)||(1301731-1301812)
chr7 (1-37)||(8590804-8590840)
chr7 (123-198)||(8017218-8017293)
chr7 (129-181)||(8640369-8640421)
[»] chr8 (2 HSPs)
chr8 (1-208)||(12528670-12528877)
chr8 (1-208)||(43745015-43745220)
[»] chr2 (9 HSPs)
chr2 (1-214)||(16661781-16661994)
chr2 (1-181)||(43625578-43625758)
chr2 (6-176)||(12245233-12245403)
chr2 (1-184)||(7542392-7542575)
chr2 (1-181)||(16657339-16657519)
chr2 (5-176)||(11999564-11999735)
chr2 (1-184)||(12234855-12235038)
chr2 (1-139)||(12258445-12258583)
chr2 (1-176)||(14703574-14703749)
[»] chr4 (3 HSPs)
chr4 (1-181)||(9335713-9335893)
chr4 (1-214)||(30775418-30775631)
chr4 (3-176)||(35132616-35132789)
[»] chr1 (4 HSPs)
chr1 (1-180)||(15595200-15595386)
chr1 (1-184)||(34466612-34466795)
chr1 (78-187)||(4678374-4678483)
chr1 (1-33)||(4678528-4678560)
[»] chr5 (2 HSPs)
chr5 (1-208)||(28220117-28220324)
chr5 (89-163)||(42555760-42555834)
[»] chr6 (6 HSPs)
chr6 (75-184)||(28910822-28910931)
chr6 (74-152)||(11170809-11170887)
chr6 (78-153)||(11156513-11156588)
chr6 (77-152)||(11209634-11209709)
chr6 (78-152)||(11196966-11197040)
chr6 (78-152)||(11200131-11200205)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 8602142 - 8602377
Alignment:
Q  3 acatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagttg 102  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||  ||| |||||||||||||||||||||||||| |||||||    
T  8602142 acatcaaaagttccaccaccaagatcaaatatgaaaatatttctctcttcaacacaattagctctcttttgaaggccatatgcaagagcagctgcagttg 8602241  T
Q  103 gttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatcac 202  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||  ||    
T  8602242 gctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccggcacagtaacaac 8602341  T
Q  203 tgcatttctaacagacaactccagaaatttctctgc 238  Q
    ||||||  | ||||   |||||||||| ||||||||    
T  8602342 tgcattcttgacaggtgactccagaaacttctctgc 8602377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 8538204 - 8538410
Alignment:
Q  3 acatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagttg 102  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||  ||| ||||||||||| ||||||||||||||||| || |    
T  8538204 acatcaaaagttccaccaccaagatcaaagatgaaaacttttctctcttcaacacaattagctctcttttgaaggccgtatgcaagagcagcagctgtag 8538303  T
Q  103 gttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatcac 202  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||| || || |||||||||||    
T  8538304 gttcattgattatccgcattacattgaggccagcaatgacaccagcatctttggtggctcttcgctgtgaatcattgaaataagcaggtactgtaatcac 8538403  T
Q  203 tgcattt 209  Q
    |||||||    
T  8538404 tgcattt 8538410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 8382878 - 8382692
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||  ||| || ||||||||||||||||||||||| |||||    
T  8382878 acacatcaaaagttccaccaccaagatcaaagatgaaaatatttctctcttcaagacaattagctctcttctgaaggccatatgcaagagcagcggcagt 8382779  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgc 187  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||    
T  8382778 tggctcattgattatccgcattacattgaggccagcaatcgcaccagcatcttttgtggctttccgttgagaatcattgaaatatgc 8382692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 8636334 - 8636138
Alignment:
Q  12 gtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagttggttcattga 111  Q
    |||||||||||||||||||| | ||||||||||||||||| |||||| |||| ||| |||||||| ||||| |||| ||| |||||||||||||||||||    
T  8636334 gtaccaccaccaagatcaaatacgaaaatgtttctctctttaacacagttacctctcttttgaagtccatacgcaaaagctgcagcagttggttcattga 8636235  T
Q  112 ttatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatcactgcatt 208  Q
    ||||||| |||||||| ||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||| || || || ||||| ||||||||    
T  8636234 ttatccgaattacattaaggccggcaatggcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcatt 8636138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 29581843 - 29581606
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||  | | ||||| |||||| ||  |||||||  ||||||||||| |||||||||||    
T  29581843 acacatcaaaagtgccaccaccaagatcaaagatgaatatatttcgttttccaacaaaattacctcccttttgaataccatatgcaagtgcagcagcagt 29581744  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
    |||||| |||||||||| |||||||||||||||||| ||    ||||||||||| ||||||||||||||||||||||||||||| || || || ||||||    
T  29581743 tggttcgttgattatcctcattacattgaggccagctataatgccagcatctttggtggcttttcgctgagaatcattgaaataagcaggcacggtaatc 29581644  T
Q  201 actgcatttctaacagacaactccagaaatttctctgc 238  Q
    ||||||||  | |||| ||| |||| ||||||||||||    
T  29581643 actgcattctttacaggcaattccaaaaatttctctgc 29581606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 8559501 - 8559706
Alignment:
Q  3 acatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagttg 102  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||||  ||| |||||||| ||||||||||||||||| |||||||    
T  8559501 acatcaaaagttccaccaccgagatcaaagatgaaaatatttctctctttaacacaattagatctcttttgaagtccatatgcaagagcagctgcagttg 8559600  T
Q  103 gttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatcac 202  Q
    |||||||||||||| |||||||||| || ||||||||  |||| |||||||| |||||| |||  ||||||||||| ||||| || || || ||||||||    
T  8559601 gttcattgattatctgcattacattaagaccagcaatttcacctgcatctttggtggctcttctttgagaatcattaaaataagcaggtacggtaatcac 8559700  T
Q  203 tgcatt 208  Q
     |||||    
T  8559701 agcatt 8559706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 8610083 - 8610289
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||| ||||| |||||||||||||||||||| ||||| ||||| | ||| |||||||||  ||| || ||||| |||||||||||||| ||||| ||    
T  8610083 acacatcgaaagtcccaccaccaagatcaaagataaaaatatttctattttccacacaattagctctcttctgaagaccatatgcaagagccgcagccgt 8610182  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
    |||||||||||| ||||| |||||||| ||||||| |||| |||||||||||||||||||||| |||||||||||||| ||||| || || || || |||    
T  8610183 tggttcattgataatccggattacattaaggccagaaatgacaccagcatcttttgtggctttccgctgagaatcattaaaataagcaggcacagtgatc 8610282  T
Q  201 actgcat 207  Q
    |||||||    
T  8610283 actgcat 8610289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 29577674 - 29577434
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacac---aattacttcttttttgaaggccatatgcaagagcagcagc 97  Q
    |||||||||| || ||||||||||||||||||||||| |  |||| || | |||||    |||||| ||| |||||||  ||||||||||| ||||||||    
T  29577674 acacatcaaaggtgccaccaccaagatcaaagatgaatacatttcgctttccaacaacaaaattacctctcttttgaattccatatgcaagtgcagcagc 29577575  T
Q  98 agttggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgta 197  Q
    ||||||||||||||||||||||||||||||||||||||||||    || |||||||| ||||||||||||||||||||||||||||| || || |||||     
T  29577574 agttggttcattgattatccgcattacattgaggccagcaataatgccggcatctttggtggcttttcgctgagaatcattgaaataagctggcactgtg 29577475  T
Q  198 atcactgcatttctaacagacaactccagaaatttctctgc 238  Q
    |||||||||||  | || |  ||||||| ||||||||||||    
T  29577474 atcactgcattctttacgggtaactccaaaaatttctctgc 29577434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 8570477 - 8570684
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| ||||| ||||| |||||||| ||||| |||||||  |||||| |||||  ||| ||||||||||||||||||||||| || |||||    
T  8570477 acacatcaaaagttccaccgccaaggtcaaagataaaaatatttctcttatcaacaaaattagctctcttttgaaggccatatgcaagagctgccgcagt 8570576  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
     ||||||||||||||||||||||||||||| ||||||||  |||| |||||||| |||||| |||| || |||||||| ||||| || || || ||||||    
T  8570577 cggttcattgattatccgcattacattgagaccagcaatttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcaggtacagtaatc 8570676  T
Q  201 actgcatt 208  Q
    ||||||||    
T  8570677 actgcatt 8570684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 8581866 - 8582073
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| ||||| ||||| |||||||| ||||| |||||||  ||||||||||||  ||| ||||||||||||||||||||||| || |||||    
T  8581866 acacatcaaaagttccacctccaaggtcaaagataaaaatatttctcttatcaacacaattagctctcttttgaaggccatatgcaagagctgccgcagt 8581965  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
     ||||||||||||||||||||||||||||| || |||||  |||| |||||||| |||||| |||| || |||||||| ||||| || || || ||||||    
T  8581966 cggttcattgattatccgcattacattgagacctgcaatttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcaggtacagtaatc 8582065  T
Q  201 actgcatt 208  Q
    ||||||||    
T  8582066 actgcatt 8582073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 7877672 - 7877528
Alignment:
Q  64 ttcttttttgaaggccatatgcaagagcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttt 163  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||  |||||||||||||||||||||||    
T  7877672 ttctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatcttttgtggcttt 7877573  T
Q  164 tcgctgagaatcattgaaatatgccggaactgtaatcactgcatt 208  Q
    ||| ||||||||||||||||| ||||| || ||||  ||||||||    
T  7877572 tcgttgagaatcattgaaataagccggcacagtaacaactgcatt 7877528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 8576492 - 8576699
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| ||||| ||||| |||||||| ||||| ||||| |  ||||||||||||  ||| |||||||||||||| |||||||| || |||||    
T  8576492 acacatcaaaagttccaccgccaaggtcaaagataaaaatatttcttttatcaacacaattagctctcttttgaaggccatacgcaagagctgccgcagt 8576591  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
     ||||||||||||||| |||| |||||||| |||||||| ||||| |||||||| |||||| |||| || |||||||| ||||| || || || | ||||    
T  8576592 cggttcattgattatctgcatgacattgagaccagcaattgcacctgcatctttagtggctcttcgttgggaatcattaaaataagcaggcacagaaatc 8576691  T
Q  201 actgcatt 208  Q
    ||||||||    
T  8576692 actgcatt 8576699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 8647043 - 8647250
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| ||||||||||| || |||||||| || ||||  |||||| |||||||  |||| || | |||||||||||| ||||||||||| ||    
T  8647043 acacatcaaaagttccaccaccaaggtcgaagatgaatatatttcgttcttcagcacaatttgttctcttgtcaaggccatatgcgagagcagcagctgt 8647142  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
    |||||||||||||||||| || | ||| |||||||||||||| || |||||| | ||||||||||||||| |||||||||| ||||| || || ||||      
T  8647143 tggttcattgattatccggatgatattaaggccagcaatggccccggcatctatagtggcttttcgctgataatcattgaagtatgcaggcacagtaaca 8647242  T
Q  201 actgcatt 208  Q
    ||||||||    
T  8647243 actgcatt 8647250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 8585708 - 8585525
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| ||||||||||||||||| |  ||||| ||||  ||  || |||| |||| | | || | |||||||||||||| ||| ||||||||    
T  8585708 acacatcaaaagtcccaccaccaagatcaaacacaaaaatatttcgttcaccatcacagttacctttgttgtcaaggccatatgcaatagctgcagcagt 8585609  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaata 184  Q
     |||||||||||||||| ||| ||||| |||||||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  8585608 gggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcattgaaata 8585525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 17268105 - 17268312
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| ||||||||||| |||||||  ||||| || |  ||||||||||| ||| |||| ||   |||||||||||||| ||| ||||||||    
T  17268105 acacatcaaaagtcccaccaccaaggtcaaagacaaaaatattccgttcttcaacacagttagttctcttgccaaggccatatgcaatagctgcagcagt 17268204  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
    |||||||||||||| |  || |||||| |||||||||||| ||||||||||| | |||||||||||||||||||| ||||| || ||||| || |||||     
T  17268205 tggttcattgattaccttcaatacattaaggccagcaatgacaccagcatctatggtggcttttcgctgagaatcgttgaagtaagccgggacagtaatg 17268304  T
Q  201 actgcatt 208  Q
    || |||||    
T  17268305 acagcatt 17268312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 6789678 - 6789886
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||| ||||| ||||||||||| || |||| |||||| ||| | ||| || |  ||||| |||| || | |||||||||||||||||||||||| ||    
T  6789678 acacatcgaaagtgccaccaccaaggtcgaagacgaaaatatttttttctccaccgtaattagttctcttatcaaggccatatgcaagagcagcagctgt 6789777  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
    ||||||||||||||| || || ||||| || |||||||||||||||||||||   |||||||| || ||||||||||||||||| || || || |||||     
T  6789778 tggttcattgattattcgtataacattaagaccagcaatggcaccagcatctaaagtggctttccgttgagaatcattgaaataagcaggcacagtaata 6789877  T
Q  201 actgcattt 209  Q
    |||||||||    
T  6789878 actgcattt 6789886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 8545799 - 8546005
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| ||||| ||||| |||||||| ||||| |||||||  ||||| ||||||  ||| ||||||||||||||||||||||| || |||||    
T  8545799 acacatcaaaagttccaccgccaaggtcaaagataaaaatatttctcttatcaac-caattagctctcttttgaaggccatatgcaagagccgccgcagt 8545897  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
     |||||||||||||||||||| ||||| || || |||||  |||| ||||||||||||| | || | || |||||||| ||||| || || || ||||||    
T  8545898 cggttcattgattatccgcatgacatttagaccggcaatttcacctgcatcttttgtggatctttgttgtgaatcattaaaataagcaggtacagtaatc 8545997  T
Q  201 actgcatt 208  Q
    ||||||||    
T  8545998 actgcatt 8546005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 13333458 - 13333269
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    |||||||||||||||||||||| ||||||||||  ||||| |||| ||   || |||||| || ||| || | |||||||||||||| ||| ||||||||    
T  13333458 acacatcaaaagtaccaccacccagatcaaagacaaaaatatttcgcttaccatcacaatcacgtctcttgtcaaggccatatgcaatagctgcagcagt 13333359  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccgg 190  Q
     |||||||||||||| || || | ||| ||||||||||| |||||||||||| | ||||| |||||||||||||||||||| || |||||    
T  13333358 aggttcattgattattcgaatgatattaaggccagcaatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccgg 13333269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 8628698 - 8628881
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| ||||||||||||||||| |  ||||| ||||  ||  || ||||  ||| | | || | |||||||||||||| ||| ||||||||    
T  8628698 acacatcaaaagtcccaccaccaagatcaaacacaaaaatatttcgttcaccatcacacctacctttgttgtcaaggccatatgcaatagctgcagcagt 8628797  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaata 184  Q
     || ||||||||||||| ||| ||||| ||||||||||||||||||||||   | |||||||||||||||||||||||||||||    
T  8628798 ggggtcattgattatcctcataacattaaggccagcaatggcaccagcattcatggtggcttttcgctgagaatcattgaaata 8628881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 8590872 - 8590987
Alignment:
Q  69 ttttgaaggccatatgcaagagcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgct 168  Q
    ||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||| | |||||||||| ||||||||||||| || ||||| | ||    
T  8590872 ttttgaaggccatatgcaaggccagcggcagttggttcattaattatccgcattacattcaagccagcaatgacaccagcatctttggtagctttcctct 8590971  T
Q  169 gagaatcattgaaata 184  Q
    |||||||||| |||||    
T  8590972 gagaatcattaaaata 8590987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 8659529 - 8659726
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    |||||||||||||||||||||||||||||||||  ||||| |||   |   || |||| | || ||| || | ||  |||||||||| ||| ||||||||    
T  8659529 acacatcaaaagtaccaccaccaagatcaaagaccaaaatattttgtttaccatcacagtcacctctcttgtcaaaaccatatgcaatagctgcagcagt 8659628  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaa 198  Q
     |||||||| |||||| | || ||||| ||||||||||||||||| | |||| | |||||||||||||||||||||||||| ||||| || |||||||    
T  8659629 aggttcattaattatctgaatgacattaaggccagcaatggcaccggaatctatggtggcttttcgctgagaatcattgaactatgcaggcactgtaa 8659726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 10494376 - 10494187
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    |||||||||||||||||||||| ||||||||||  ||||| ||||  |   |  |||||| |||||| || | |||||||||||||| ||| ||||||||    
T  10494376 acacatcaaaagtaccaccacccagatcaaagacaaaaatatttcggttaccctcacaatcacttctcttgtcaaggccatatgcaatagctgcagcagt 10494277  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccgg 190  Q
     ||||||||||||||||| || ||||| ||||||||||| |||||||||||  | || || ||||| |||||||| ||||| || |||||    
T  10494276 aggttcattgattatccgaatgacattaaggccagcaatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccgg 10494187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 8654616 - 8654805
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||||||||||||||||||||| |  ||||| || |  |   || || | |||||||  || | |||||||||||||| ||| || |||||    
T  8654616 acacatcaaaagtaccaccaccaagatcaaataccaaaatattccgtttaccatcatagttacttcgcttgtcaaggccatatgcaatagctgcggcagt 8654715  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccgg 190  Q
     |||||||||| |||||| || || || || ||||||||||||||||||||| | || |||||||||||||| |||||||| ||||||||    
T  8654716 aggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatctatggttgcttttcgctgagagtcattgaagtatgccgg 8654805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 17260407 - 17260605
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| || |||||||| |||||||  ||||| || |   ||| |||||||||| |||| ||   |||||||||||||| ||| |||||| |    
T  17260407 acacatcaaaagtccccccaccaaggtcaaagacaaaaatattccgtacttaaacacaattagttctcttgacaaggccatatgcaatagctgcagcaat 17260506  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaat 199  Q
     |||||||| |||| |  ||  ||||  |||||||||||  ||||||||||| | ||||||||||||||||||||||||||||| || ||||| |||||    
T  17260507 aggttcattaattaacttcaaaacataaaggccagcaataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaat 17260605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 8667658 - 8667765
Alignment:
Q  74 aaggccatatgcaagagcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaa 173  Q
    |||||||||||||| ||| || ||||| ||||||||||||||||| || ||||| || |||||||| | |||||||||| | ||||| ||||||||||||    
T  8667658 aaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatctatggtggcctttcgctgagaa 8667757  T
Q  174 tcattgaa 181  Q
    ||||||||    
T  8667758 tcattgaa 8667765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 3147515 - 3147621
Alignment:
Q  78 ccatatgcaagagcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcat 177  Q
    ||||| |||| ||| |||||||| |||||||||||||||||||| | ||| |||||||||||  ||||||||||| |||| ||||| ||||||| |||||    
T  3147515 ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatctattgtcgctttccgctgagcatcat 3147614  T
Q  178 tgaaata 184  Q
    |||||||    
T  3147615 tgaaata 3147621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 8671559 - 8671452
Alignment:
Q  74 aaggccatatgcaagagcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaa 173  Q
    |||||||||||||| ||| |||||||| ||||||||||||||||| || ||||| || |||||||| | |||||||||  | |||||  |||||||||||    
T  8671559 aaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatcaatggtggccgttcgctgagaa 8671460  T
Q  174 tcattgaa 181  Q
    ||||||||    
T  8671459 tcattgaa 8671452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 27830804 - 27830694
Alignment:
Q  74 aaggccatatgcaagagcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaa 173  Q
    |||||||||||||| ||| |||||||| || ||  | ||||||||||| ||||| ||||||||||||||||| | ||||   ||||||||||| |||||     
T  27830804 aaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaatggcaccggaatctacagtggcttttcgttgagag 27830705  T
Q  174 tcattgaaata 184  Q
    |||||||||||    
T  27830704 tcattgaaata 27830694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 1301731 - 1301812
Alignment:
Q  102 ggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaat 183  Q
    |||||||| |||||| | || ||||| ||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||    
T  1301731 ggttcattaattatctgaatgacattaaggccagcaattgcaccggcatctatggtggcttttcgctgagaatcattgaaat 1301812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8590804 - 8590840
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaa 37  Q
    ||||||||||||| |||||||||||||||||||||||    
T  8590804 acacatcaaaagtgccaccaccaagatcaaagatgaa 8590840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 8017293 - 8017218
Alignment:
Q  123 acattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaa 198  Q
    |||||||| || |||||| |||| ||||| ||||||||||  ||||| ||||||||||| || || ||||||||||    
T  8017293 acattgagtcctgcaatgacaccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaa 8017218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 8640421 - 8640369
Alignment:
Q  129 aggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaa 181  Q
    |||||||||||||| || |||||| | ||||||||| ||||| ||||||||||    
T  8640421 aggccagcaatggccccggcatctatggtggctttttgctgataatcattgaa 8640369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 12528670 - 12528877
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| ||||| ||||| ||||| || |||||  |||||||||||| |||||||  ||| ||||||| |||||||||||||||||| |||||    
T  12528670 acacatcaaaagttccaccgccaaggtcaaaaataaaaatccttctctcttcaagacaattagctctcttttgaatgccatatgcaagagcagctgcagt 12528769  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||||||||| || ||||||  |||||| |||||||||||||| || || || ||||||    
T  12528770 tggttcgttgattatccgtattacattgaggccagcaatgacaccagcatccttggtggctcgtcgctgcgaatcattgaaatacgctggcaccgtaatc 12528869  T
Q  201 actgcatt 208  Q
    ||||||||    
T  12528870 actgcatt 12528877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 43745015 - 43745220
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| |||||||| || |||||||||||||| |||||  ||   ||| | ||| |||| ||||  || |||||||||| ||| ||||||||    
T  43745015 acacatcaaaagtcccaccacccaggtcaaagatgaaaatatttcttcctcgcacagagttagttctcttttccagaccatatgcaatagctgcagcagt 43745114  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
     |||||||||||||||  ||| ||||  || ||||||||||||||||||||  | |||||||| |||||| ||||||||||||| ||||| || ||||      
T  43745115 gggttcattgattatcttcataacatcaagcccagcaatggcaccagcatc--tagtggctttccgctgataatcattgaaataagccggcacagtaaca 43745212  T
Q  201 actgcatt 208  Q
    ||||||||    
T  43745213 actgcatt 43745220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 16661994 - 16661781
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| |||||||||||||||||||  ||||| ||||| ||  || |||||||||||||||| | |||||||||||||| ||| || |||||    
T  16661994 acacatcaaaagtcccaccaccaagatcaaagacaaaaatatttctttcaccatcacaattacttcttttgtcaaggccatatgcaatagctgctgcagt 16661895  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
     |||||||||||||||| ||  || || |||||||||||||||||||||||  | |||||||||||||||||||| || ||||| || ||||| || |      
T  16661894 gggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgaca 16661795  T
Q  201 actgcatttctaac 214  Q
    ||||||||| ||||    
T  16661794 actgcatttttaac 16661781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 43625578 - 43625758
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||  ||| ||||||||||| |||| || | |||||| ||||| ||||||||||| ||    
T  43625578 acacatcaaaagtaccaccaccaaggtcaaagatgaaaatatttcgttctccaacacaattaattctcttgttaaggccgtatgctagagcagcagctgt 43625677  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaa 181  Q
    ||||||||||||||  || |  ||||| |||||  ||||| ||||| ||||| | ||||||||||||||||||||||||||    
T  43625678 tggttcattgattactcgtaaaacattaaggccgacaatgacaccaacatctatggtggcttttcgctgagaatcattgaa 43625758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 12245403 - 12245233
Alignment:
Q  6 tcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagttggtt 105  Q
    |||||||| ||||||||||||||||| |  ||||||||||| ||| ||||||||| |  ||| |||| |||||||||||||| ||| |||||||| ||||    
T  12245403 tcaaaagtgccaccaccaagatcaaacacaaaaatgtttctttctccaacacaatcagctctcttttcaaggccatatgcaacagctgcagcagtgggtt 12245304  T
Q  106 cattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatca 176  Q
    |||| |||| || ||| |||||||| |||||||| |  ||||||||| | || ||||||||||||||||||    
T  12245303 cattcattaccctcataacattgagaccagcaattgagccagcatctatcgttgcttttcgctgagaatca 12245233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 7542392 - 7542575
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| ||||| ||||||||||| |  ||||| |||| |||| || || ||| | |||| || | |||||||||||||| ||| || |||||    
T  7542392 acacatcaaaagtgccaccgccaagatcaaaaacaaaaatatttcgctctccatcataatcagttctcttgtcaaggccatatgcaacagctgcggcagt 7542491  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaata 184  Q
     |||||||| |||  || ||| ||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||| |||||    
T  7542492 aggttcattcattgccctcataacattgaggccagcaatggcacccgcatctatagtggcttttcgttgagaatcattaaaata 7542575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 16657519 - 16657339
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||||||||| ||||| |||||||  ||||| || |  |   || |||||| |||||| || | ||| |||||||||| ||| ||||||||    
T  16657519 acacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaagaccatatgcaatagctgcagcagt 16657420  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaa 181  Q
     ||||||||||| || || || ||||| |||||||| ||||||||||||||| | |||||||||||||| |||||||||||    
T  16657419 aggttcattgataattcgaatgacattaaggccagcgatggcaccagcatctatggtggcttttcgctgcgaatcattgaa 16657339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 11999564 - 11999735
Alignment:
Q  5 atcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagttggt 104  Q
    ||||||||| ||||| |||||||||||||  ||||||||||| ||| ||||||||| |  ||| || | |||||||||||||| ||  |||||||| |||    
T  11999564 atcaaaagtgccaccgccaagatcaaagactaaaatgtttctttctccaacacaatcagctctcttgtcaaggccatatgcaacagttgcagcagtgggt 11999663  T
Q  105 tcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatca 176  Q
    ||||| |||| ||  || ||||||| ||||||||| ||||| |||||| | ||||||||||| |||||||||    
T  11999664 tcattcattacccttataacattgatgccagcaattgcaccggcatctatagtggcttttcgttgagaatca 11999735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 12234855 - 12235038
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| ||||| || |||||||| |  ||||| ||||  ||| ||||||||| | |||| || | ||| |||||||||| ||| || ||  |    
T  12234855 acacatcaaaagtgccaccgccgagatcaaaaacaaaaatatttcgttctccaacacaatcagttctcttgtcaagaccatatgcaacagcggctgccat 12234954  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaata 184  Q
     ||||| || |||| || ||| |||||||||||||||||| ||||||||||| | || |||||||| |||||||||||||||||    
T  12234955 gggttcgttcattaccctcataacattgaggccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaata 12235038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 12258583 - 12258445
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| |||||||||||||||||||  ||||| || |  | ||| ||||||||| ||||||| | |||||||||||||| ||| ||||||||    
T  12258583 acacatcaaaagtgccaccaccaagatcaaagacaaaaatattccgtttttcgacacaattaattcttttgtcaaggccatatgcaaaagctgcagcagt 12258484  T
Q  101 tggttcattgattatccgcattacattgaggccagcaat 139  Q
     |||||||| | ||||  ||| ||||| |||||| ||||    
T  12258483 aggttcatttaatatcttcataacattcaggccaacaat 12258445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 14703574 - 14703749
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    |||| ||||||||||||||||||||||||||||  || || || |  ||| || || ||| | |||| || | |||||||||||||| ||| ||||| ||    
T  14703574 acacgtcaaaagtaccaccaccaagatcaaagacaaatatattacgttctccaccataatcagttctcttgtcaaggccatatgcaatagctgcagctgt 14703673  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatca 176  Q
     |||||||| |||| || ||| ||||||||||| |||||  ||||||||||  | ||||||||||  |||||||||    
T  14703674 aggttcattcattaccctcataacattgaggccggcaataacaccagcatccatagtggcttttctttgagaatca 14703749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 9335893 - 9335713
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    |||||||||||||||| ||||| ||||||||||  ||||| ||||  |   || |||| | | |||| || | |||||||||||||| ||| ||||||||    
T  9335893 acacatcaaaagtaccgccacccagatcaaagacaaaaatatttcggttaccatcacagtcatttctcttatcaaggccatatgcaatagctgcagcagt 9335794  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaa 181  Q
     ||||||||||||||||| || ||||| ||||||||||| | |||||||||| | ||||| ||||||||||||||||||||    
T  9335793 aggttcattgattatccgaatgacattaaggccagcaatagtaccagcatctatggtggcctttcgctgagaatcattgaa 9335713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 30775418 - 30775631
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| |||||||||||||||||||  ||||| || |||||  || ||||  ||| ||| || | ||| |||||||||| ||| || |||||    
T  30775418 acacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagt 30775517  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
     || ||||| ||||| | ||| ||||| || ||||||||||||||||||||  | |||||||||||||| | |||||||||||| || || || || ||     
T  30775518 gggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcacagtgata 30775617  T
Q  201 actgcatttctaac 214  Q
    ||||||||| ||||    
T  30775618 actgcatttttaac 30775631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 35132616 - 35132789
Alignment:
Q  3 acatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagttg 102  Q
    ||||||||||| |||||||||||||| ||||  ||||| |||   ||| || |||||| |  ||| || | ||||||||||||||  || || ||||| |    
T  35132616 acatcaaaagtgccaccaccaagatcgaagacaaaaatattttgttctccagcacaatcagatctcttgtcaaggccatatgcaaccgctgcggcagtag 35132715  T
Q  103 gttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatca 176  Q
    ||||||| ||||  | ||| |||||| | |||||||| |||||||||||| | ||||||||||| |||||||||    
T  35132716 gttcattcattactctcataacattgggaccagcaatagcaccagcatctatagtggcttttcgttgagaatca 35132789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 15595200 - 15595386
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| |||||||||||||||||||  ||||| ||||| ||| ||||||| ||| | || || | |||||||||||||| ||| ||||| ||    
T  15595200 acacatcaaaagtgccaccaccaagatcaaagacaaaaatatttctttctccaacacagttaatcctcttgtcaaggccatatgcaatagctgcagctgt 15595299  T
Q  101 t-------ggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattga 180  Q
            ||||||||||||| ||| || ||||| ||||||||||||||||| |||||| | ||||||||||| |||||||||||||    
T  15595300 cagctgtcggttcattgattacccgtataacattaaggccagcaatggcacctgcatctatagtggcttttcgttgagaatcattga 15595386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 34466795 - 34466612
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| ||||||||||| ||||||| |||||| ||||  ||||| ||| | | |  ||| || | ||| |||||||||| ||| ||||||||    
T  34466795 acacatcaaaagtcccaccaccaaggtcaaagacgaaaatatttccttcttccacaaagtcagctctcttgtcaagtccatatgcaatagctgcagcagt 34466696  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaata 184  Q
     ||||||||||||||  |||  ||||| ||||||||||| | |||||||||    || |||||||||||||||||||| |||||    
T  34466695 gggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatccacagtagcttttcgctgagaatcattaaaata 34466612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 4678483 - 4678374
Alignment:
Q  78 ccatatgcaagagcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcat 177  Q
    |||||||||| ||| ||| |||| ||||| ||||||||  | || ||||| || ||||||||||||||||||||| | || |||||||| ||||||||||    
T  4678483 ccatatgcaatagctgcaacagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgttgagaatcat 4678384  T
Q  178 tgaaatatgc 187  Q
    |||| |||||    
T  4678383 tgaagtatgc 4678374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4678560 - 4678528
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaaga 33  Q
    ||||||||||||||||||||||||| |||||||    
T  4678560 acacatcaaaagtaccaccaccaaggtcaaaga 4678528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 28220117 - 28220324
Alignment:
Q  1 acacatcaaaagtaccaccaccaagatcaaagatgaaaatgtttctctcttcaacacaattacttcttttttgaaggccatatgcaagagcagcagcagt 100  Q
    ||||||||||||| |||||||| || |||||||||||||| ||||  ||| | |  || ||| ||||||| |  |  |||||||||| ||||||||||||    
T  28220117 acacatcaaaagtcccaccacccaggtcaaagatgaaaatatttcgttctcccatgcagttagttcttttgtccaatccatatgcaatagcagcagcagt 28220216  T
Q  101 tggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattgaaatatgccggaactgtaatc 200  Q
     |||||||||| |||||  |  ||||| || |||||||||| ||| |||||| | |||||||| |||||| ||||||||||||| || || || |||||     
T  28220217 gggttcattgactatccttagaacatttagaccagcaatggtacctgcatctatggtggctttccgctgataatcattgaaataagcaggcacagtaata 28220316  T
Q  201 actgcatt 208  Q
    ||||||||    
T  28220317 actgcatt 28220324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 42555834 - 42555760
Alignment:
Q  89 agcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttt 163  Q
    |||||||||||| |||||||||||||||  ||| ||||| || |||||||| | ||| |||||| ||||||||||    
T  42555834 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggcttt 42555760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 28910822 - 28910931
Alignment:
Q  75 aggccatatgcaagagcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatcttttgtggcttttcgctgagaat 174  Q
    |||||||||| || |||  |||||||  | ||||||||||||||||| ||||| || |   ||||||||||||||||| | |||||||| | || |||||    
T  28910822 aggccatatgaaatagctacagcagtgagctcattgattatccgcataacattaagcctgacaatggcaccagcatctatggtggctttcctctaagaat 28910921  T
Q  175 cattgaaata 184  Q
    ||||||||||    
T  28910922 cattgaaata 28910931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 11170809 - 11170887
Alignment:
Q  74 aaggccatatgcaagagcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatct 152  Q
    ||||||||||||||  ||||| ||||| || ||||||| ||| ||||  ||||||||||||||||| ||||| ||||||    
T  11170809 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatct 11170887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 11156513 - 11156588
Alignment:
Q  78 ccatatgcaagagcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatctt 153  Q
    ||||||||||  ||||| ||||  || ||||||||||| ||||| |||||||||||||||||  |||| |||||||    
T  11156513 ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctt 11156588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 11209634 - 11209709
Alignment:
Q  77 gccatatgcaagagcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatct 152  Q
    |||||||||||  ||||| ||||| || ||||||| ||| ||||  ||||||||||||||||| ||||| ||||||    
T  11209634 gccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatct 11209709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 11196966 - 11197040
Alignment:
Q  78 ccatatgcaagagcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatct 152  Q
    ||||||||||  ||||| ||||  || ||||||||||| ||||| |||||||||||||||||  |||| ||||||    
T  11196966 ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct 11197040  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 11200131 - 11200205
Alignment:
Q  78 ccatatgcaagagcagcagcagttggttcattgattatccgcattacattgaggccagcaatggcaccagcatct 152  Q
    ||||||||||  ||||| ||||  || ||||||||||| ||||  ||||||||||||||||| ||||| ||||||    
T  11200131 ccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagcacccgcatct 11200205  T

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