View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8931_low_58 (Length: 246)

Name: NF8931_low_58
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8931_low_58
NF8931_low_58
[»] chr5 (17 HSPs)
chr5 (10-229)||(30713344-30713563)
chr5 (10-229)||(30435784-30436003)
chr5 (26-225)||(29853295-29853494)
chr5 (23-226)||(30400055-30400258)
chr5 (25-226)||(30206505-30206706)
chr5 (14-229)||(30483376-30483591)
chr5 (14-229)||(30338441-30338656)
chr5 (20-218)||(30331061-30331259)
chr5 (25-229)||(30242291-30242495)
chr5 (23-218)||(30060350-30060545)
chr5 (25-229)||(30677087-30677291)
chr5 (25-162)||(17418149-17418286)
chr5 (23-218)||(30749624-30749819)
chr5 (101-229)||(29872233-29872361)
chr5 (136-216)||(17983001-17983081)
chr5 (172-217)||(30521556-30521601)
chr5 (172-217)||(30561896-30561941)
[»] chr7 (1 HSPs)
chr7 (10-229)||(26707303-26707522)
[»] chr4 (2 HSPs)
chr4 (25-229)||(20296501-20296705)
chr4 (172-218)||(52352088-52352134)
[»] chr1 (2 HSPs)
chr1 (154-216)||(7099533-7099595)
chr1 (169-218)||(7581649-7581698)
[»] chr3 (1 HSPs)
chr3 (31-70)||(25293947-25293986)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 30713563 - 30713344
Alignment:
Q  10 ataattcttcaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgt 109  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30713563 ataattctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaatttttcagagtgaaaacttatgtggtgt 30713464  T
Q  110 gtgttttatgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaa 209  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30713463 gtgttttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaa 30713364  T
Q  210 aagaaatgtttccagaatat 229  Q
    ||||||||||||||||||||    
T  30713363 aagaaatgtttccagaatat 30713344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 30435784 - 30436003
Alignment:
Q  10 ataattcttcaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgt 109  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30435784 ataattctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagttaaaacttatgtggtgt 30435883  T
Q  110 gtgttttatgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaa 209  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  30435884 gtgttttttgtcaaattagtcatgtttgcattctccaaatacatacattctttccccgttactgattgagcgagatcatggacaagatcatgcatcttga 30435983  T
Q  210 aagaaatgtttccagaatat 229  Q
    ||||||||| |||| |||||    
T  30435984 aagaaatgtctccaaaatat 30436003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 29853295 - 29853494
Alignment:
Q  26 aacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttatgtcaaat 125  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| ||| |||||||     
T  29853295 aacaatgttcgcaaggattcaacttttttaaaggcaccctcatcgaatgataacaaattatcggagttaaaacttatgtggtgtgtgctttttgtcaaac 29853394  T
Q  126 tagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaagaaatgtttccaga 225  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || ||| |||||| ||||||    
T  29853395 tagtcatgtttgcattctccaaatacacacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaaaaaatgtctccaga 29853494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 30400055 - 30400258
Alignment:
Q  23 tcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttatgtca 122  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| || ||    
T  30400055 tcaaaccatgttcgcaaggattcaacttttctgaaggcaccctcatcgaatgataacaaattatcagagttaaaacttatgtggtgtgtgctttttgaca 30400154  T
Q  123 aattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaagaaatgtttcc 222  Q
    || ||||||||||||||||||||||||| | |||||||| |||| ||||||| | ||||||||||||||||||||||||||| || || |||||||| ||    
T  30400155 aactagtcatgtttgcattctccaaatatatacattcttgccccattactgacttagcgagatcatggacaagatcatgcatcttgaatgaaatgttgcc 30400254  T
Q  223 agaa 226  Q
    ||||    
T  30400255 agaa 30400258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 30206505 - 30206706
Alignment:
Q  25 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttatgtcaaa 124  Q
    |||||||||||  ||||||||||||||  ||||||||||||| |||||||||||||  |  ||| ||||||||||||||||||||||| ||| || ||||    
T  30206505 aaacaatgttctcaaggattcaactttcctgaaggcaccctcgtcgaatgataacacgtcatcatagtgaaaacttatgtggtgtgtgctttttgacaaa 30206604  T
Q  125 ttagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaagaaatgtttccag 224  Q
     |||||||||||| |||||||||||||| ||||||||  ||| ||||||||||||| ||||||||||||||||||||||| || |||||||||| |||||    
T  30206605 gtagtcatgtttgaattctccaaatacatacattcttgacccattactgattgagcaagatcatggacaagatcatgcatcttgaaagaaatgtctccag 30206704  T
Q  225 aa 226  Q
    ||    
T  30206705 aa 30206706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 30483376 - 30483591
Alignment:
Q  14 ttcttcaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgt 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||   |||||||| ||||| || || |    || |||||  ||||||||||||     
T  30483376 ttcttcaagtcaaacaatgttcgcaaggattcaacttttttgaaagcattttcatcgaaggataaaaatttcttgctgttaaaaccaatgtggtgtgtgc 30483475  T
Q  114 tttatgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaaga 213  Q
    ||| || |||||||||| |||||  |||||||||| ||  |||||||| |||| ||||||||||||||||||||||||||||||||||||| || |||||    
T  30483476 tttttgacaaattagtcgtgtttttattctccaaacacgtacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaaga 30483575  T
Q  214 aatgtttccagaatat 229  Q
    ||||| ||||||||||    
T  30483576 aatgtctccagaatat 30483591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 30338656 - 30338441
Alignment:
Q  14 ttcttcaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgt 113  Q
    ||||||| ||||||||| ||||| |||||||||||||||||||| |||   |||||||| ||||| || || |    || |||||  ||||||||||||     
T  30338656 ttcttcatgtcaaacaaagttcgcaaggattcaacttttttgaaagcattttcatcgaaggataaaaagttgttgctgtcaaaaccaatgtggtgtgtgc 30338557  T
Q  114 tttatgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaaga 213  Q
    ||| || |||||||||| |||||  |||||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| || |||||    
T  30338556 tttttgacaaattagtcgtgtttttattctccaaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaaga 30338457  T
Q  214 aatgtttccagaatat 229  Q
    ||||| ||||||||||    
T  30338456 aatgtctccagaatat 30338441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 30331259 - 30331061
Alignment:
Q  20 aagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttatg 119  Q
    |||||| |||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| |  |||| |||||||||||| || ||| ||| ||    
T  30331259 aagtcatacaatgttcgcaaggattcaacttttttgaaggcaccgtcatcgattgataacaaattattggagtcaaaacttatgtgatgggtgctttttg 30331160  T
Q  120 tcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaagaaatgt 218  Q
    ||||| ||||||||||||||||||||| ||||| | ||| || | ||  || ||||||||| ||||||| || ||||||| || | || ||||||||||    
T  30331159 tcaaactagtcatgtttgcattctccagatacatatattgttgctccagtattgattgagcaagatcattgaaaagatcacgcgtctttaaagaaatgt 30331061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 30242495 - 30242291
Alignment:
Q  25 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttatgtcaaa 124  Q
    |||||||||||  |||||||||||||||||||| |||  || ||| || |||||||| | ||   ||| |||||  |||||||||||| ||| || ||||    
T  30242495 aaacaatgttctcaaggattcaacttttttgaaagcattcttatcaaaggataacaagtctttgtagtcaaaaccaatgtggtgtgtgctttttgacaaa 30242396  T
Q  125 ttagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaagaaatgtttccag 224  Q
     | |||||||||   ||||||||||||| |||||||  |||| ||||||||||||||||||||||||||||||||||||| || |||||||||| |||||    
T  30242395 ctggtcatgtttttgttctccaaatacatacattctggccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccag 30242296  T
Q  225 aatat 229  Q
    |||||    
T  30242295 aatat 30242291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 30060350 - 30060545
Alignment:
Q  23 tcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttatgtca 122  Q
    |||||| ||||||| |||||||||||| ||||||| ||| |||  ||||| |||||| | | || |  || |||||| |||||||||||| ||| || ||    
T  30060350 tcaaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgaca 30060449  T
Q  123 aattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaagaaatgt 218  Q
    || |||||| |||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||| |||||||| || || |||||||    
T  30060450 aactagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaaggtcatgcatcttgaatgaaatgt 30060545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 30677291 - 30677087
Alignment:
Q  25 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaat-tttcagagtgaaaacttatgtggtgtgtgttttatgtcaa 123  Q
    |||||||||||  |||||||||||||||||||| |||  || ||| || |||||||| | ||| || || |||||  |||||||||||| ||| || |||    
T  30677291 aaacaatgttctcaaggattcaacttttttgaaagcattcttatcaaaggataacaagtctttgag-gtcaaaaccaatgtggtgtgtgctttttgacaa 30677193  T
Q  124 attagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaagaaatgtttcca 223  Q
    | | |||||||||   ||||||||||||| |||||||  |||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  30677192 actggtcatgttttttttctccaaatacatacattctggccccattactaattgagcgagatcatggacaagatcatgcatcttaaaagaaatgtctcca 30677093  T
Q  224 gaatat 229  Q
    ||||||    
T  30677092 gaatat 30677087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 17418286 - 17418149
Alignment:
Q  25 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttatgtcaaa 124  Q
    |||||||||||| |||||||||||||||||||||||| |||||| || ||||| | | |  ||||||||||||| ||||||||||||| ||| || ||||    
T  17418286 aaacaatgttcgcaaggattcaacttttttgaaggcatcctcattgagtgatagcgagtcatcagagtgaaaacatatgtggtgtgtgctttttgacaaa 17418187  T
Q  125 ttagtcatgtttgcattctccaaatacacacattcttt 162  Q
     || |||||||||||||||| ||||||| |||||||||    
T  17418186 ataatcatgtttgcattctctaaatacatacattcttt 17418149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 30749624 - 30749819
Alignment:
Q  23 tcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttatgtca 122  Q
    |||||| ||||||| |||||||||||| ||||||| ||| |||  ||||| |||||| | |  | |  || |||||| || ||||||||| |||  | ||    
T  30749624 tcaaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtcgttattgtcaaaactaatatggtgtgtgcttttcgaca 30749723  T
Q  123 aattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaagaaatgt 218  Q
    || |||||| |||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||||||||| || || || |||||||    
T  30749724 aactagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgaatcttgaatgaaatgt 30749819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 229
Target Start/End: Original strand, 29872233 - 29872361
Alignment:
Q  101 atgtggtgtgtgttttatgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcat 200  Q
    |||||||||||| ||| || |||| | |||||||||   |||||||||| || |||||||| |||| ||| |||||||||||||||||||||||||||||    
T  29872233 atgtggtgtgtgctttttgacaaactggtcatgtttttgttctccaaatgcatacattcttgccccattattgattgagcgagatcatggacaagatcat 29872332  T
Q  201 gcattttaaaagaaatgtttccagaatat 229  Q
    |||| || |||||||||| ||||||||||    
T  29872333 gcatcttgaaagaaatgtctccagaatat 29872361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 17983001 - 17983081
Alignment:
Q  136 tgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaagaaat 216  Q
    ||||||||| |||  ||||||||| | ||||| |||||||||||| ||||||||||| ||||| |||||||| ||||||||    
T  17983001 tgcattctctaaaaccacacattcatgccccgctactgattgagcaagatcatggacgagatcgtgcattttgaaagaaat 17983081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 30521601 - 30521556
Alignment:
Q  172 tgattgagcgagatcatggacaagatcatgcattttaaaagaaatg 217  Q
    ||||||||| ||||||||||||||||||||||  || |||||||||    
T  30521601 tgattgagcaagatcatggacaagatcatgcaacttgaaagaaatg 30521556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 30561941 - 30561896
Alignment:
Q  172 tgattgagcgagatcatggacaagatcatgcattttaaaagaaatg 217  Q
    ||||||||| ||||||||||||||||||||||  || |||||||||    
T  30561941 tgattgagcaagatcatggacaagatcatgcaacttgaaagaaatg 30561896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 26707303 - 26707522
Alignment:
Q  10 ataattcttcaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgt 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||| ||| | || |||| ||||||||||||||||    
T  26707303 ataattcttcaagtcaaacaatgttcgcaaggattcaacttttttgaagataccctcatcgaatgataaaaaagtatcggagttaaaacttatgtggtgt 26707402  T
Q  110 gtgttttatgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaa 209  Q
    ||| ||| ||||||| || ||||||||||||||||||||||||  |||||||  ||| |||||||||||||||||||||||| |||||||||||| || |    
T  26707403 gtgctttttgtcaaactactcatgtttgcattctccaaatacatgcattcttgtcccattactgattgagcgagatcatggataagatcatgcatcttga 26707502  T
Q  210 aagaaatgtttccagaatat 229  Q
    ||||||||| ||||||||||    
T  26707503 aagaaatgtctccagaatat 26707522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 20296705 - 20296501
Alignment:
Q  25 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttatgtcaaa 124  Q
    |||||||||||| ||||||||||||| ||||||||||||||  | ||  |||||||| | |    ||| |||||  |||||||||||| ||  || ||||    
T  20296705 aaacaatgttcgcaaggattcaacttctttgaaggcacccttgttgatggataacaagtctgtgtagtcaaaaccaatgtggtgtgtgcttcgtgacaaa 20296606  T
Q  125 ttagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaagaaatgtttccag 224  Q
    ||||| | ||||  || ||||||||||| |||||||||||||  |||||| |||  ||||||||  |||||||||||||| || ||| |||| | || ||    
T  20296605 ttagtaacgtttttatcctccaaatacatacattctttccccactactgaatgaaggagatcataaacaagatcatgcatcttgaaataaatatctctag 20296506  T
Q  225 aatat 229  Q
    |||||    
T  20296505 aatat 20296501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 52352088 - 52352134
Alignment:
Q  172 tgattgagcgagatcatggacaagatcatgcattttaaaagaaatgt 218  Q
    ||||||||| |||||||| |||||||||||||| || ||||||||||    
T  52352088 tgattgagcaagatcatgtacaagatcatgcatcttgaaagaaatgt 52352134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 7099533 - 7099595
Alignment:
Q  154 acattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaagaaat 216  Q
    |||||||| ||||  |||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  7099533 acattcttgcccccctactgattgagcaagatcatggacgagatcatgcattttgaaagaaat 7099595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 7581698 - 7581649
Alignment:
Q  169 tactgattgagcgagatcatggacaagatcatgcattttaaaagaaatgt 218  Q
    ||||||| |||| ||||||||||  |||||||||||||| ||||||||||    
T  7581698 tactgatcgagcaagatcatggatgagatcatgcattttgaaagaaatgt 7581649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 25293986 - 25293947
Alignment:
Q  31 tgttcgtaaggattcaacttttttgaaggcaccctcatcg 70  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  25293986 tgttcgtaaggattcaacttttatgaaggaaccctcatcg 25293947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University