View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8931_low_59 (Length: 244)
Name: NF8931_low_59
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8931_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 53953290 - 53953051
Alignment:
| Q |
1 |
caccacaaaataaactccaaactccaaattttccgaaatcagattcagataaacgaatcttccttttctgcttagcatttcgaatgctgaattcaatgct |
100 |
Q |
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| T |
53953290 |
caccacaaaataaactccaaactccaaattttccgaaatcagattcagataaacgaagcttccttttctgcttagcatttcgaatgctaaattcaatgct |
53953191 |
T |
|
| Q |
101 |
agtgcagagttacttcaatccagatgaacattggcaaggtcctgaagttgcacatcgaatcgcattcggatacggtcacttaacatgggaatggaaacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53953190 |
agtgcagagttacttcaatccagatgaacattggcaaggtcctgaagttgcacatcgaatcgcattcggatacggtcacttaacatgggaatggaaacag |
53953091 |
T |
|
| Q |
201 |
ggtattcgaagctatcttcatccgttcctctctgctcctc |
240 |
Q |
| |
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||||||||||||||||||||||||||||||| || ||||| |
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| T |
53953090 |
ggtattcgaagctatcttcatccgttcctctttgttcctc |
53953051 |
T |
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