View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8931_low_62 (Length: 242)

Name: NF8931_low_62
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8931_low_62
NF8931_low_62
[»] scaffold1652 (3 HSPs)
scaffold1652 (1-219)||(21-239)
scaffold1652 (1-68)||(253-320)
scaffold1652 (1-63)||(336-398)
[»] scaffold0902 (2 HSPs)
scaffold0902 (1-193)||(3570-3762)
scaffold0902 (1-56)||(3477-3532)
[»] scaffold0002 (2 HSPs)
scaffold0002 (60-219)||(165054-165213)
scaffold0002 (1-68)||(165271-165338)
[»] chr6 (6 HSPs)
chr6 (60-219)||(14248513-14248672)
chr6 (1-138)||(14317028-14317165)
chr6 (161-219)||(14317161-14317219)
chr6 (1-82)||(14351655-14351736)
chr6 (1-68)||(14248388-14248455)
chr6 (1-63)||(14316950-14317012)
[»] scaffold1176 (2 HSPs)
scaffold1176 (1-68)||(112-179)
scaffold1176 (136-191)||(1265-1320)
[»] chr4 (4 HSPs)
chr4 (5-70)||(37245129-37245194)
chr4 (107-164)||(37237814-37237871)
chr4 (119-210)||(37245288-37245382)
chr4 (4-63)||(37241922-37241981)


Alignment Details
Target: scaffold1652 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 239 - 21
Alignment:
Q  1 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaaccagatgaagcagtcggtgaagaagaggga 100  Q
    |||||||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  239 aggcgatggtacttgagatggaggagtagagatcgacgatggagagacagcaggagcagcagcgggagaaccagatgaagcagtcgttaaagaagaggga 140  T
Q  101 gcactattcacagctaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttaggggatgatggcggtg 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||    
T  139 gcactattcacagttaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttgggtgatgatggtggtg 40  T
Q  201 atcgagcaacagcggaact 219  Q
    ||| |||||| ||||||||    
T  39 atctagcaacggcggaact 21  T

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Target: scaffold1652; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 320 - 253
Alignment:
Q  1 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggag 68  Q
    |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |||||| ||||    
T  320 aggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaggag 253  T

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Target: scaffold1652; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 398 - 336
Alignment:
Q  1 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagc 63  Q
    |||| ||||||||||||||||||||||||| || |||||||| |  ||||||||||| |||||    
T  398 aggctatggtgcttgagatggaggagtagatatcgacgatggagtcacagcaggagcggcagc 336  T

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Target: scaffold0902 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 3570 - 3762
Alignment:
Q  1 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaaccagatgaagcagtcggtgaagaagaggga 100  Q
    ||||||||||||||||| ||||||  ||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3570 aggcgatggtgcttgagttggagggatagagatcgacgatggagtgacagcaggagcagcagcgggagaaccagatgaagcagttggtgaagaagaggga 3669  T
Q  101 gcactattcacagctaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttaggggatgat 193  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3670 gcactattcagaggtaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttgggggatgat 3762  T

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Target: scaffold0902; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3477 - 3532
Alignment:
Q  1 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggag 56  Q
    ||||| ||||||||||||||||||||||||||| |||||||| |  ||||||||||    
T  3477 aggcgttggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 3532  T

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Target: scaffold0002 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 165213 - 165054
Alignment:
Q  60 cagcgggagaaccagatgaagcagtcggtgaagaagagggagcactattcacagctaccggaggagacgccactggtgagtcagcggagggagaaatagc 159  Q
    |||| |||||||||||  |||||| |||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||    
T  165213 cagcaggagaaccagagaaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccactggtgagtcagcggagggagaaatagc 165114  T
Q  160 aggtgatggaaacggagaagacttaggggatgatggcggtgatcgagcaacagcggaact 219  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||    
T  165113 aggtgatggaaacggagaagactggggggatgatggtggtgatcgagcaacagcggaact 165054  T

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Target: scaffold0002; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 165338 - 165271
Alignment:
Q  1 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggag 68  Q
    |||||||||| |||||||||||||||||||||| ||| |||| |  ||||||||||||||||| ||||    
T  165338 aggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggag 165271  T

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Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 14248513 - 14248672
Alignment:
Q  60 cagcgggagaaccagatgaagcagtcggtgaagaagagggagcactattcacagctaccggaggagacgccactggtgagtcagcggagggagaaatagc 159  Q
    |||| |||||||||||  |||||| |||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||    
T  14248513 cagcaggagaaccagagaaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccactggtgagtcagcggagggagaaatagc 14248612  T
Q  160 aggtgatggaaacggagaagacttaggggatgatggcggtgatcgagcaacagcggaact 219  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||    
T  14248613 aggtgatggaaacggagaagactggggggatgatggtggtgatcgagcaacagcggaact 14248672  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 14317028 - 14317165
Alignment:
Q  1 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaaccagatgaagcagtcggtgaagaagaggga 100  Q
    |||||||||| |||||||||| || ||||||||  | ||||| |||||| ||||||| ||||| ||||||||||| ||||||| |||||||| |||||||    
T  14317028 aggcgatggtccttgagatggtggggtagagatccatgatggagcgacaacaggagctgcagcaggagaaccagaggaagcagacggtgaaggagaggga 14317127  T
Q  101 gcactattcacagctaccggaggagacgccactggtga 138  Q
    |||||||||| || ||||||||||||||||||||||||    
T  14317128 gcactattcagaggtaccggaggagacgccactggtga 14317165  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 14317161 - 14317219
Alignment:
Q  161 ggtgatggaaacggagaagacttaggggatgatggcggtgatcgagcaacagcggaact 219  Q
    ||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||    
T  14317161 ggtgatggaaacggagaagacttgggtgatgatggtggtgatcgagcaacagcggaact 14317219  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 14351655 - 14351736
Alignment:
Q  1 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaaccagatgaagca 82  Q
    ||||||||||||||||||||| |||||||||| ||| ||||| |  |||||||||||  |||||||||||||| | ||||||    
T  14351655 aggcgatggtgcttgagatggtggagtagagactgatgatggagtaacagcaggagcgacagcgggagaaccaaaggaagca 14351736  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 14248388 - 14248455
Alignment:
Q  1 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggag 68  Q
    |||||||||| |||||||||||||||||||||| ||| |||| |  ||||||||||||||||| ||||    
T  14248388 aggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggag 14248455  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 14316950 - 14317012
Alignment:
Q  1 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagc 63  Q
    |||||| ||||||||||| |||||||||||||| || ||||| |  ||| |||||||||||||    
T  14316950 aggcgagggtgcttgagacggaggagtagagatcgatgatggagtcacatcaggagcagcagc 14317012  T

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Target: scaffold1176 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 179 - 112
Alignment:
Q  1 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggag 68  Q
    ||||||||||||||||||||||||||||||||| || ||||| |  ||||||||||||||||| ||||    
T  179 aggcgatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggagcagcagcaggag 112  T

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Target: scaffold1176; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 1320 - 1265
Alignment:
Q  136 tgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttaggggatg 191  Q
    ||||| ||| ||||||||||| ||||| |||||||||||||||||||| |||||||    
T  1320 tgagttagctgagggagaaatcgcaggagatggaaacggagaagacttgggggatg 1265  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 37245129 - 37245194
Alignment:
Q  5 gatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaa 70  Q
    ||||||||||||||||||||||||||||| |||||||| |  ||||||||||| ||| ||||||||    
T  37245129 gatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaa 37245194  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 37237814 - 37237871
Alignment:
Q  107 ttcacagctaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtg 164  Q
    ||||||| ||| |||||||| ||||| |||||||||||||||||||| || |||||||    
T  37237814 ttcacaggtacgggaggagatgccaccggtgagtcagcggagggagagatcgcaggtg 37237871  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 37245288 - 37245382
Alignment:
Q  119 ggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttagg---ggatgatggcggtgatcgagcaac 210  Q
    |||| ||| ||||||||||||| |||||||||||||||    |||||||||||||||||| || | ||    |||||||| ||||||||||||||    
T  37245288 ggagcagatgccactggtgagttagcggagggagaaattattggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaac 37245382  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 37241922 - 37241981
Alignment:
Q  4 cgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagc 63  Q
    ||||||||||| || |||||||||||||||||||||||| |  | ||||||||| |||||    
T  37241922 cgatggtgctttagttggaggagtagagattgacgatggagtaatagcaggagcggcagc 37241981  T

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