View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8931_low_7 (Length: 590)

Name: NF8931_low_7
Description: NF8931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8931_low_7
NF8931_low_7
[»] chr8 (1 HSPs)
chr8 (244-575)||(32667172-32667510)
[»] chr1 (3 HSPs)
chr1 (240-410)||(1741669-1741839)
chr1 (375-426)||(48471132-48471183)
chr1 (241-326)||(3622559-3622643)
[»] chr5 (2 HSPs)
chr5 (21-178)||(41138017-41138178)
chr5 (374-426)||(31110732-31110784)
[»] chr4 (5 HSPs)
chr4 (387-520)||(198330-198465)
chr4 (439-520)||(33757901-33757982)
chr4 (241-333)||(198209-198301)
chr4 (241-326)||(37275144-37275229)
chr4 (241-297)||(11334378-11334434)
[»] chr7 (3 HSPs)
chr7 (439-519)||(45026778-45026858)
chr7 (191-232)||(4895121-4895162)
chr7 (374-426)||(39317712-39317764)
[»] chr3 (2 HSPs)
chr3 (375-428)||(53144810-53144863)
chr3 (241-326)||(37104984-37105069)
[»] scaffold0039 (1 HSPs)
scaffold0039 (186-232)||(90616-90662)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 244 - 575
Target Start/End: Complemental strand, 32667510 - 32667172
Alignment:
Q  244 cattggattgaaaggaaacaatgatcttactataagttgtctacactatatatttttcctcattgtcattaacctctcaatgtcattcacttgcttcttt 343  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  32667510 cattggattgaaaggaaataatgatcttactataagttgtctacactatatatttttt-tcattgtcattaacctctcaatgtcattcacttgcttcttt 32667412  T
Q  344 ctgcttccatttctgccatacgacccagacaataaaatcatcttcaaggataagatcagaccttcaatatttactgcagaaatc--------agaagaac 435  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||        |||| |||    
T  32667411 ctgcttccattcctgccatacgacccagacaataaaatcatcttcaaggataagataagaccttcaacatttactgcagaaatcagaaaattagaataac 32667312  T
Q  436 acaaaaacaaaattatagttaaaaaacaagataaatgaattgtggaatcatatttatatgaataagtaaaaatacaaatgtaatgnnnnnnnnnnnnnnn 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||                   
T  32667311 acaaaaacaaaattatagttaaaaaacaagataaatgaattgtggaatcatatctatatgaataagtaaaaatacaaatgtaatgtttttattttctttt 32667212  T
Q  536 nnagttgtttggtttggattgagtggaaaagggccaattg 575  Q
      ||||||||||||||||||||||||||||||||||||||    
T  32667211 ttagttgtttggtttggattgagtggaaaagggccaattg 32667172  T

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Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 240 - 410
Target Start/End: Complemental strand, 1741839 - 1741669
Alignment:
Q  240 gaaccattggattgaaaggaaacaatgatcttactataagttgtctacactatatatttttcctcattgtcattaacctctcaatgtcattcacttgctt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1741839 gaaccattggattgaaaggaaacaatgatcttactataagttgtctacactatatattttttctcattgtcattaacctctcaatgtcattcacttgctt 1741740  T
Q  340 ctttctgcttccatttctgccatacgacccagacaataaaatcatcttcaaggataagatcagaccttcaa 410  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  1741739 ctttctgcttccattcctaccatacgacccagacaataaaatcatcttaaagggtaagatcagaccttcaa 1741669  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 48471132 - 48471183
Alignment:
Q  375 ataaaatcatcttcaaggataagatcagaccttcaatatttactgcagaaat 426  Q
    ||||||||||||||||||||||||| ||| |||||| |||||||||| ||||    
T  48471132 ataaaatcatcttcaaggataagatgagatcttcaacatttactgcataaat 48471183  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 326
Target Start/End: Complemental strand, 3622643 - 3622559
Alignment:
Q  241 aaccattggattgaaaggaaacaatgatcttactataagttgtctacactatatatttttcctcattgtcattaacctctcaatgt 326  Q
    ||||||| |||| ||||||| || |||||||||||||   |||| ||||||||| ||||| |||| |||||| ||||||| |||||    
T  3622643 aaccattagattaaaaggaa-cattgatcttactatagactgtccacactatatgttttttctcactgtcatcaacctctgaatgt 3622559  T

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Target: chr5 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 21 - 178
Target Start/End: Complemental strand, 41138178 - 41138017
Alignment:
Q  21 agggaatgaggtgaagaggaagtcgtaagttgagtactagagaagaaaacccagtccaatacaaaaacatttcaaagcaatcaaaaaaggcaaaagagta 120  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41138178 agggaatgaggtgaagaggaagtcgtaagttgagcactagagaagaaaacccagtccaatacaaaaacatttcaaagcaatcaaaaaaggcaaaagagta 41138079  T
Q  121 atattataatta----taagagaagaatagttattccatacctcccaaattggagaggaaca 178  Q
    ||||||||| ||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41138078 atattataagtataagtaagagaagaatagttattccatacctcccaaattggagaggaaca 41138017  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 31110732 - 31110784
Alignment:
Q  374 aataaaatcatcttcaaggataagatcagaccttcaatatttactgcagaaat 426  Q
    ||||||||||||||||||||||| || ||| |||||| |||||||||||||||    
T  31110732 aataaaatcatcttcaaggataaaatgagatcttcaacatttactgcagaaat 31110784  T

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Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 387 - 520
Target Start/End: Original strand, 198330 - 198465
Alignment:
Q  387 tcaaggataagatcagaccttcaatatttactgcagaaatcagaagaacacaaa--aacaaaattatagttaaaaaacaagataaatgaattgtggaatc 484  Q
    ||||||||||||||| | |||||| ||||||||||||||||| ||||||||| |  ||||||||||||||||||||| |||| |||||||||||||||||    
T  198330 tcaaggataagatcatatcttcaacatttactgcagaaatcaaaagaacacatacaaacaaaattatagttaaaaaagaagagaaatgaattgtggaatc 198429  T
Q  485 atatttatatgaataagtaaaaatacaaatgtaatg 520  Q
    | || ||||||||||||||||||| ||||| |||||    
T  198430 agatctatatgaataagtaaaaatgcaaatttaatg 198465  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 439 - 520
Target Start/End: Complemental strand, 33757982 - 33757901
Alignment:
Q  439 aaaacaaaattatagttaaaaaacaagataaatgaattgtggaatcatatttatatgaataagtaaaaatacaaatgtaatg 520  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| | || ||||||||||||||||||| |||||||||||    
T  33757982 aaaacaaaattatagttaaaaaacaagagaaatgaattgttgaattagatctatatgaataagtaaaaatgcaaatgtaatg 33757901  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 333
Target Start/End: Original strand, 198209 - 198301
Alignment:
Q  241 aaccattggattgaaaggaaacaatgatcttactataagttgtctacactatatatttttcctcattgtcattaacctctcaatgtcattcac 333  Q
    ||||||| |||| ||||| || | |||||||| |||| |||||||||||| ||||||||| |||| |  ||| ||||||||||| ||||||||    
T  198209 aaccattagattaaaagggaatactgatcttattataggttgtctacactgtatattttttctcactagcatcaacctctcaatatcattcac 198301  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 326
Target Start/End: Original strand, 37275144 - 37275229
Alignment:
Q  241 aaccattggattgaaaggaaacaatgatcttactataagttgtctacactatatatttttcctcattgtcattaacctctcaatgt 326  Q
    ||||||| |||| ||||| |||| |||||||||||||   |||| ||||||||| ||||| |||| |||||| ||||||| |||||    
T  37275144 aaccattagattaaaagggaacattgatcttactatagactgtccacactatatgttttttctcactgtcatcaacctctgaatgt 37275229  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 11334378 - 11334434
Alignment:
Q  241 aaccattggattgaaaggaaacaatgatcttactataagttgtctacactatatatt 297  Q
    ||||||| |||| ||||| |||| | ||||||||||| |||||||||||| ||||||    
T  11334378 aaccattagattaaaagggaacactaatcttactataggttgtctacactgtatatt 11334434  T

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Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 439 - 519
Target Start/End: Complemental strand, 45026858 - 45026778
Alignment:
Q  439 aaaacaaaattatagttaaaaaacaagataaatgaattgtggaatcatatttatatgaataagtaaaaatacaaatgtaat 519  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| | || ||||||||||||||||||| ||||||||||    
T  45026858 aaaacaaaattatagttaaaaaacaagagaaatgaattgttgaattagatctatatgaataagtaaaaatgcaaatgtaat 45026778  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 4895162 - 4895121
Alignment:
Q  191 atttcacatgggaaagattaatcattttctaccataggaaag 232  Q
    |||||||||||||||| |||||||||||| ||||| ||||||    
T  4895162 atttcacatgggaaaggttaatcattttccaccatgggaaag 4895121  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 39317712 - 39317764
Alignment:
Q  374 aataaaatcatcttcaaggataagatcagaccttcaatatttactgcagaaat 426  Q
    ||||||||||||||||||| || ||||||| |||||  ||||||| |||||||    
T  39317712 aataaaatcatcttcaaggttaggatcagatcttcaccatttactacagaaat 39317764  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 428
Target Start/End: Original strand, 53144810 - 53144863
Alignment:
Q  375 ataaaatcatcttcaaggataagatcagaccttcaatatttactgcagaaatca 428  Q
    ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  53144810 ataaaatcatcttcaaggataagatgagatcttcaacatttactgcagaaatca 53144863  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 326
Target Start/End: Complemental strand, 37105069 - 37104984
Alignment:
Q  241 aaccattggattgaaaggaaacaatgatcttactataagttgtctacactatatatttttcctcattgtcattaacctctcaatgt 326  Q
    ||||||| |||| ||||| |||| |||||||||||||   |||| ||||||||| ||||| |||| |||||| ||||||| |||||    
T  37105069 aaccattagattaaaagggaacattgatcttactatagactgtccacactatatgttttttctcactgtcatcaacctctgaatgt 37104984  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 90616 - 90662
Alignment:
Q  186 gtggtatttcacatgggaaagattaatcattttctaccataggaaag 232  Q
    |||| |||||||||||||||| | |||||||||| ||||||||||||    
T  90616 gtggcatttcacatgggaaaggtgaatcattttccaccataggaaag 90662  T

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