View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8932_low_1 (Length: 1110)
Name: NF8932_low_1
Description: NF8932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8932_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 743; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 12 - 815
Target Start/End: Original strand, 21179035 - 21179838
Alignment:
| Q |
12 |
atggacatcatctaatctcatcacatatctacattctaatccaaacaatgtagtacaatactattacattcatacaacttgattctatctcaataccact |
111 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179035 |
atggatatcatctaatctcatcacatatctacattctaatccaaacaatgtagtacaatactattacattcatacaacttgattctatctcaataccact |
21179134 |
T |
|
| Q |
112 |
aatcctttcaattagcgattggaataaactcattctttattaactcaatttgacgactaaaacacccaagaacacttggatgggatgataagatatttct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
21179135 |
aatcctttcaattagcgattggaataaactcattctttcttaactcaatttgacgactaaaacactcaagagcacttggatgggatgataagatatttct |
21179234 |
T |
|
| Q |
212 |
tctaacttaaccagaggtcatgggttctaatccatccatttaaatgtagcagttgccttaaatctcttgaaggagagctttgtcattcactacctgactt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21179235 |
tctaacttaaccagaggtcatgggttctaatccatccctttaaatgtagcagttgccttaaatctcttgaaggagagctttgtcatccactacctgactt |
21179334 |
T |
|
| Q |
312 |
gagtgattagtctatgcagttgtgtggagatcatatccgattcacacnnnnnnntcgatgactaaaacacaacattggaagataataaaagaaagaaaaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21179335 |
gagtgattagtctatgcagttgtgtggagatcatatccgattcacacaaaaaaatcgatgactaaaacacaacattggaagataaaaaaagaaagaaaaa |
21179434 |
T |
|
| Q |
412 |
tatagtagcatggacataacaagtttttcaaattactcaaacaagtaagttattttaattttcaaaactagtgaagtcactctaaactcatcttgcttca |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21179435 |
tatagtagcatggacataacaagtttttcaaattactcaaacaagtaagttattttaattctcaaaactagtgaagtcactctaaactcatcttgcttca |
21179534 |
T |
|
| Q |
512 |
actagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaattttcaatacctctcacattttgaaatgccggtggct |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21179535 |
actagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagagagtcttgaattttcaatacctctcacattttgaaatgccggtggct |
21179634 |
T |
|
| Q |
612 |
ttggactaggaagggatgtagtgtcattcccaatcattgttacaacatcagacatggttggtctatcttctggactttgttgaacacatagaagtccaat |
711 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179635 |
ttggactaagaagggatgtagtgtcattcccaatcattgttacaacatcagacatggttggtctatcttctggactttgttgaacacatagaagtccaat |
21179734 |
T |
|
| Q |
712 |
attcacgtattttggtactaaatgcttgttggagatatcatccagttttgaatcaatcaagtccattccagaattgttggtccatagatcccaagccttg |
811 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179735 |
attcacgtattttggtactaaatgcttgttggagatatcatccagttttgaatcaatcaagtccattccagaattgttggtccatagatcccaagccttg |
21179834 |
T |
|
| Q |
812 |
aata |
815 |
Q |
| |
|
|||| |
|
|
| T |
21179835 |
aata |
21179838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 863 - 1110
Target Start/End: Original strand, 21179908 - 21180155
Alignment:
| Q |
863 |
attaagataagttgagttgaaattaggaacttacatatccaagaagattgaaggaatttgtttgataaaaaccagtattcttctttccgcttataatctc |
962 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21179908 |
attaagataagttgagttgaatttaggaacttacatatccaagaagattgaaggaatttgtttgataaaaaccagtattcttctttccgcttataatctc |
21180007 |
T |
|
| Q |
963 |
taacaaaaggactccaaagctaaacacgtcagatttaatcgagtaaacgccttccatagcatattctggggacatgtagccactgaaaaaccatcattaa |
1062 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21180008 |
taacaaaaggactccaaagctaaacacgtcagatttaatcgaataaacgccttccatagcatattctggggacatgtagccactgaaaaaccatcattaa |
21180107 |
T |
|
| Q |
1063 |
agagttcttatttgatataaaattttgaagcaaattttcattgcaaat |
1110 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21180108 |
agagttcttagttgatataaaattttgaagcaaattttcattgcaaat |
21180155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 477 - 842
Target Start/End: Complemental strand, 23190528 - 23190162
Alignment:
| Q |
477 |
aactagtgaagtcactctaaa-ctcatcttgcttcaactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaat |
575 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||| ||||||| ||||| |||||| ||||| |||| ||||||||||| | || |||||||||| |
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|
| T |
23190528 |
aactagcgaagtcactctaaaactcatcttgcttcaatgagtgaatctgtgatgccattcagagaaatgtttccttctatgctttttgagagtcttgaat |
23190429 |
T |
|
| Q |
576 |
tttcaatacctctcacattttgaaatgccggtggctttggactaggaagggatgtagtgtcattcccaatcattgttacaacatcagacatggttggtct |
675 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||| | |||||||||| ||||||||| |||||||||| ||||||||||||||||||||| || |
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|
| T |
23190428 |
attcaatacctctcacgttttgaaatgctggtggctttggaatcggaagggatgcagtgtcattaccaatcattgatacaacatcagacatggttggcct |
23190329 |
T |
|
| Q |
676 |
atcttctggactttgttgaacacatagaagtccaatattcacgtattttggtactaaatgcttgttggagatatcatccagttttgaatcaatcaagtcc |
775 |
Q |
| |
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|||||| ||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| || ||| ||||| | ||| |
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|
| T |
23190328 |
atcttccggactttgttgaacacagagaagtccgatattcacgtatcttggtactaaatgcttgttggagatatcatccaattctgagtcaattagctcc |
23190229 |
T |
|
| Q |
776 |
attccagaattgttggtccatagatcccaagccttgaatattcagcaagtaaagaacccaaaattat |
842 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
23190228 |
attccagaatcattgttccaaagatcccaagccttgagtattcaacaagtaaagaacccaaaattat |
23190162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 487 - 842
Target Start/End: Complemental strand, 23183142 - 23182786
Alignment:
| Q |
487 |
gtcactctaaa-ctcatcttgcttcaactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaattttcaatacc |
585 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||| ||||| |||||||||||| |||| ||||||||||| | || ||||||||| ||| ||| || |
|
|
| T |
23183142 |
gtcactctaaaactcatcttgcttcaatgactgaatctgtgatgccattcacagaaatgtttccttctatgctttttgagagtcttgaacttttaatgcc |
23183043 |
T |
|
| Q |
586 |
tctcacattttgaaatgccggtggctttggactaggaagggatgtagtgtcattcccaatcattgttacaacatcagacatggttggtctatcttctgga |
685 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||| |||| ||||||||| |||| ||||| ||||||||||||||||||||| ||||| || ||| |
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|
| T |
23183042 |
tctcacattttgaaatgctggtggctttggaatcggaagcgatgcagtgtcattaccaaacattgatacaacatcagacatggttggcctatcatccgga |
23182943 |
T |
|
| Q |
686 |
ctttgttgaacacatagaagtccaatattcacgtattttggtactaaatgcttgttggagatatcatccagttttgaatcaatcaagtccattccagaat |
785 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| || ||||||||||||||||||| |||||||||| || ||||||||| | ||||||||||||| |
|
|
| T |
23182942 |
ctttgttgaacacagagaagtccgatattcacgtatcttagtactaaatgcttgttggatatatcatccaattctgaatcaattagctccattccagaat |
23182843 |
T |
|
| Q |
786 |
tgttggtccatagatcccaagccttgaatattcagcaagtaaagaacccaaaattat |
842 |
Q |
| |
|
||||||||| |||||||||||||||| || ||| |||||||||||||||||||||| |
|
|
| T |
23182842 |
cgttggtccaaagatcccaagccttgagtaatcaacaagtaaagaacccaaaattat |
23182786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 880 - 1074
Target Start/End: Complemental strand, 23182675 - 23182482
Alignment:
| Q |
880 |
tgaaattaggaacttacatatccaagaagattgaaggaatttgtttgataaaaaccagtattcttctttccgcttataatctctaacaaaaggactccaa |
979 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
23182675 |
tgaatttaggtacttacatatccaagaagattgaaagagcttgtttgataaaaaccagtattcttcttgccacttataatctctaacaaaagcactccaa |
23182576 |
T |
|
| Q |
980 |
agctaaacacgtcagatttaatcgagtaaacgccttccatagcatattctggggacatgtagccactgaaaaaccatcattaaagagttcttatt |
1074 |
Q |
| |
|
|||| || ||||| ||||||| ||| ||| |||||||||||||||||| || |||||||||||||| |||||||| | ||||||||| ||||| |
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|
| T |
23182575 |
agctgaagacgtcggatttaactgagaaaaggccttccatagcatattcaggagacatgtagccact-aaaaaccaagaataaagagttattatt |
23182482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 880 - 1074
Target Start/End: Complemental strand, 23190052 - 23189859
Alignment:
| Q |
880 |
tgaaattaggaacttacatatccaagaagattgaaggaatttgtttgataaaaaccagtattcttctttccgcttataatctctaacaaaaggactccaa |
979 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||||| ||| ||||||| |
|
|
| T |
23190052 |
tgaatttaggtacttacatatccaagaagattgaaagagcttgtttgataaaaaccagtattcttcttgccacttataatctctaacagaagaactccaa |
23189953 |
T |
|
| Q |
980 |
agctaaacacgtcagatttaatcgagtaaacgccttccatagcatattctggggacatgtagccactgaaaaaccatcattaaagagttcttatt |
1074 |
Q |
| |
|
||||||| ||||| ||||||| ||| ||| |||||||||||||||||| || |||||||||||||| |||||||| | ||||||||| ||||| |
|
|
| T |
23189952 |
agctaaagacgtcggatttaactgagaaaaggccttccatagcatattcaggagacatgtagccact-aaaaaccaagaataaagagttattatt |
23189859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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