View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8932_low_10 (Length: 431)
Name: NF8932_low_10
Description: NF8932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8932_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 33067162 - 33067580
Alignment:
| Q |
1 |
aatctgttgaacctgtaaacttctcaatggagccaaacttgaacctgatcttcttttccaaagactattctcacttttgtttccttcttccaacttattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33067162 |
aatctgttgaacctgtaaacttctcaatggagccaaacttgaacctgatcttcttttccaaagactattctcacttttgtttccttcttccaacttattc |
33067261 |
T |
|
| Q |
101 |
accctcttgatcacaggtaaaggaggatccatttcatcaatttttataccaacaacaacattctcattcctactacacctttcaatatttttgggcacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33067262 |
accctcttgatcacaggtaaaggaggatccatttcatcaatttttataccaacaacaacattctcattcctaatacacctttcaatatttttgggcacct |
33067361 |
T |
|
| Q |
201 |
tcacaatattagtactattacctaccaccctttgcttggtttttgtggtggtagaagtagttgagggggtgctaataagattcttactagaaaaaagttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33067362 |
tcacaatattagtactattacctaccaccctttgcttggttttagtggtggtagaagtagttgagggggtgctaataagattcttactagaaaaaagttt |
33067461 |
T |
|
| Q |
301 |
tttgagtttggaatatttcacaactggtgaaataattgagggggtgttacttttgttgttgaaactgagcaacttgtattgtgaagttggaaatccagca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33067462 |
tttgagtttggaatatttcacaactggtgaaataattgagggggtgttacttttgttgttgaaactgagcaacttgtattgtgaagttggaaatccagca |
33067561 |
T |
|
| Q |
401 |
attttgttgtttcttttga |
419 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33067562 |
attttgttgtttcttttga |
33067580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University