View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8932_low_11 (Length: 421)

Name: NF8932_low_11
Description: NF8932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8932_low_11
NF8932_low_11
[»] chr8 (4 HSPs)
chr8 (22-405)||(14653948-14654333)
chr8 (283-358)||(14082729-14082803)
chr8 (373-405)||(24909192-24909224)
chr8 (373-405)||(24911413-24911445)
[»] scaffold0045 (1 HSPs)
scaffold0045 (22-219)||(78944-79139)
[»] chr4 (3 HSPs)
chr4 (283-358)||(24251860-24251934)
chr4 (283-342)||(32113070-32113129)
chr4 (283-334)||(9161198-9161249)
[»] chr7 (3 HSPs)
chr7 (283-359)||(27400668-27400743)
chr7 (283-358)||(2458494-2458567)
chr7 (285-358)||(778954-779026)
[»] scaffold0010 (1 HSPs)
scaffold0010 (283-358)||(123357-123431)
[»] chr6 (4 HSPs)
chr6 (283-358)||(12697203-12697277)
chr6 (283-358)||(9375510-9375584)
chr6 (283-333)||(17190480-17190530)
chr6 (235-281)||(24065678-24065724)
[»] chr1 (1 HSPs)
chr1 (283-334)||(31160554-31160605)
[»] chr3 (1 HSPs)
chr3 (235-286)||(11137134-11137185)


Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 22 - 405
Target Start/End: Original strand, 14653948 - 14654333
Alignment:
Q  22 tatacagacgtgattaaataatcaaggaacacaaaacctgattggaaaattcaatctgatttcatcggtggctttgacgaaactattgcaactgaatctt 121  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||    
T  14653948 tatacagacgtgattaaataatcaaggaacgcaaaacctgattggaaaattcgatctgatttcatcggtggctttgacgaaactattgtcactgaatctt 14654047  T
Q  122 tcattcatcggctgcttcgacgaaaccagagcagtttgttggcgatcgctttctagaaacaccgaaagcgaagctgggttggtatttcaccggccgtctt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654048 tcattcatcggctgcttcgacgaaaccagagcagtttgttggcgatcgcttcctagaaacaccgaaagcgaagctgggttggtatttcaccggccgtctt 14654147  T
Q  222 atttagattt--tgagtgtggcctaggttagctttgccgaggttcctacagactgcgccaaccgtacaataatcgatattagggtttagtatcgtaatgg 319  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |||    
T  14654148 atttagattttatgagtgtggcctaggttagctttgccgaggttcctacaggcggcgccaactgtacaataatcgatattagggtttagtatcgtattgg 14654247  T
Q  320 tcatgccatgagaaggctttcaaggggtggtatttatagtggtatgatctatggtgacttaagcctcaagtaatgagggtacttaa 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654248 tcatgccatgagaaggctttcaaggggtggtatttatagtggtatgatctatggtgacttaagcctcaagtaatgagggtacttaa 14654333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 14082729 - 14082803
Alignment:
Q  283 gtacaataatcgatattagggtttagtatcgtaatggtcatgccatgagaaggctttcaaggggtggtatttatag 358  Q
    ||||||||||||||||||||||||||||| ||| ||||||| || |||||||| |||||| ||||| |||||||||    
T  14082729 gtacaataatcgatattagggtttagtattgtattggtcattccttgagaaggttttcaa-gggtgatatttatag 14082803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 24909192 - 24909224
Alignment:
Q  373 gtgacttaagcctcaagtaatgagggtacttaa 405  Q
    ||||||||||| |||||||||||||||||||||    
T  24909192 gtgacttaagcttcaagtaatgagggtacttaa 24909224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 24911413 - 24911445
Alignment:
Q  373 gtgacttaagcctcaagtaatgagggtacttaa 405  Q
    ||||||||||| |||||||||||||||||||||    
T  24911413 gtgacttaagcttcaagtaatgagggtacttaa 24911445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 79139 - 78944
Alignment:
Q  22 tatacagacgtgattaaataatcaaggaacacaaaacctgattggaaaattcaatctgatttcatcggtggctttgacgaaactattgcaactgaatctt 121  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||   ||||||||||    
T  79139 tatacagacgtgattaaataatcaaggaacgcaaaacctgattggaaaattcgatctgattttatcgatggctttgacgaaactattatcactgaatctt 79040  T
Q  122 tcattcatcggctgcttcgacgaaaccagagcagtttgttggcgatcgctttctagaaacaccgaaagcgaagctgggttggtatttcaccggccgtc 219  Q
    ||||||||| ||||||||| ||||||||||| ||||||| |||||| | || ||||||||||   | ||||||| |||||||||||||||||||||||    
T  79039 tcattcatccgctgcttcggcgaaaccagagaagtttgtcggcgattgtttcctagaaacac--tatgcgaagccgggttggtatttcaccggccgtc 78944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 24251860 - 24251934
Alignment:
Q  283 gtacaataatcgatattagggtttagtatcgtaatggtcatgccatgagaaggctttcaaggggtggtatttatag 358  Q
    |||||| |||||||||||||||||||||| ||| |||||||||| |||||||||| |||| |||||||||||||||    
T  24251860 gtacaacaatcgatattagggtttagtattgtattggtcatgccttgagaaggctctcaa-gggtggtatttatag 24251934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 32113129 - 32113070
Alignment:
Q  283 gtacaataatcgatattagggtttagtatcgtaatggtcatgccatgagaaggctttcaa 342  Q
    |||||||||||||||||| |||||||||| ||| |||||||||| |||||||||| ||||    
T  32113129 gtacaataatcgatattaaggtttagtattgtattggtcatgccttgagaaggctctcaa 32113070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 9161249 - 9161198
Alignment:
Q  283 gtacaataatcgatattagggtttagtatcgtaatggtcatgccatgagaag 334  Q
    ||||||||||||||||||||||||||||| ||| | |||||||| |||||||    
T  9161249 gtacaataatcgatattagggtttagtattgtattagtcatgccttgagaag 9161198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 359
Target Start/End: Complemental strand, 27400743 - 27400668
Alignment:
Q  283 gtacaataatcgatattagggtttagtatcgtaatggtcatgccatgagaaggctttcaaggggtggtatttatagt 359  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||| |||||||||| |||| ||||| ||||||||||    
T  27400743 gtacaataatcgatattagggttcagtattgtattggtcatgccttgagaaggctctcaa-gggtgatatttatagt 27400668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 2458494 - 2458567
Alignment:
Q  283 gtacaataatcgatattagggtttagtatcgtaatggtcatgccatgagaaggctttcaaggggtggtatttatag 358  Q
    |||||||||||| ||||||||||| |||| ||| |||||||||| |||||||||| ||||||| ||||||||||||    
T  2458494 gtacaataatcg-tattagggttt-gtattgtattggtcatgccttgagaaggctctcaagggttggtatttatag 2458567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 778954 - 779026
Alignment:
Q  285 acaataatcgatattagggtttagtatcgtaatggtcatgccatgagaaggctttcaaggggtggtatttatag 358  Q
    ||||||||||||||||||||||  ||| ||| |||||||||| | |||||||| |||| |||||||||||||||    
T  778954 acaataatcgatattagggtttcatattgtattggtcatgcctttagaaggctctcaa-gggtggtatttatag 779026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 123357 - 123431
Alignment:
Q  283 gtacaataatcgatattagggtttagtatcgtaatggtcatgccatgagaaggctttcaaggggtggtatttatag 358  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| |||||| ||| ||||  ||||||||||||||    
T  123357 gtacaataatcgatattagggtttagtattgtattggtcatgccttgagaatgctctcaa-aggtggtatttatag 123431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 12697203 - 12697277
Alignment:
Q  283 gtacaataatcgatattagggtttagtatcgtaatggtcatgccatgagaaggctttcaaggggtggtatttatag 358  Q
    |||||||||| ||||||||||||||||   ||| |||||||||| |||||||||| |||| |||||||||||||||    
T  12697203 gtacaataattgatattagggtttagtcatgtattggtcatgccctgagaaggctctcaa-gggtggtatttatag 12697277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 9375510 - 9375584
Alignment:
Q  283 gtacaataatcgatattagggtttagtatcgtaatggtcatgccatgagaaggctttcaaggggtggtatttatag 358  Q
    ||||||||||| ||||||| |||||| ||| || |||||||| | |||||||||| |||| |||||||||||||||    
T  9375510 gtacaataatcaatattagcgtttagcatcatattggtcatgtcttgagaaggctctcaa-gggtggtatttatag 9375584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 17190530 - 17190480
Alignment:
Q  283 gtacaataatcgatattagggtttagtatcgtaatggtcatgccatgagaa 333  Q
    |||||||||| |||||||||||||||||| ||| |||||||||| ||||||    
T  17190530 gtacaataattgatattagggtttagtattgtattggtcatgccttgagaa 17190480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 24065724 - 24065678
Alignment:
Q  235 gtgtggcctaggttagctttgccgaggttcctacagactgcgccaac 281  Q
    |||||||||||||||| ||| |||||||||| |||||| ||||||||    
T  24065724 gtgtggcctaggttagttttaccgaggttcccacagacggcgccaac 24065678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 31160605 - 31160554
Alignment:
Q  283 gtacaataatcgatattagggtttagtatcgtaatggtcatgccatgagaag 334  Q
    |||||||||| |||||||||||||||||| ||| |||||||||| |||||||    
T  31160605 gtacaataattgatattagggtttagtattgtattggtcatgccttgagaag 31160554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 11137134 - 11137185
Alignment:
Q  235 gtgtggcctaggttagctttgccgaggttcctacagactgcgccaaccgtac 286  Q
    |||||||||||||||| ||| |||||||||| |||||| |||||||| ||||    
T  11137134 gtgtggcctaggttagttttaccgaggttcccacagacggcgccaactgtac 11137185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University