View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8932_low_18 (Length: 250)
Name: NF8932_low_18
Description: NF8932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8932_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30942827 - 30942585
Alignment:
| Q |
1 |
ttgcatggatcaaaaatcaatgaagataacttacgtgagtgaaactgtgatcatttacatcttcaaattgagttttttgattaatcactatcatattgtc |
100 |
Q |
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| T |
30942827 |
ttgcatgtatcaaaaatcaatgaagataacttacgtgagtgaaactgtgatcatttacatcttcaaattgagttttttgattaatcactatcatgttgtc |
30942728 |
T |
|
| Q |
101 |
atatggttctccactacatgagatttaaaaatacattaagtccaaattaattattcaaacagattgcttcaacatgttagtcctgaatcaaataaatttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30942727 |
gtatggttctccactacatgagatttaaaaatacattaagtccaaattaattattcaaacaggttgcttcaacatgttagtcctgaatcaaataaatttc |
30942628 |
T |
|
| Q |
201 |
atcaaacctgcaagttaatggaaaaccatctagatctctgctt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942627 |
atcaaacctgcaagttaatggaaaaccatctagatctctgctt |
30942585 |
T |
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