View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8932_low_21 (Length: 249)

Name: NF8932_low_21
Description: NF8932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8932_low_21
NF8932_low_21
[»] chr5 (1 HSPs)
chr5 (1-231)||(14837497-14837727)
[»] scaffold0028 (2 HSPs)
scaffold0028 (31-240)||(109748-109948)
scaffold0028 (31-240)||(127330-127530)
[»] chr7 (2 HSPs)
chr7 (31-184)||(31206984-31207136)
chr7 (31-184)||(31210375-31210527)
[»] chr1 (1 HSPs)
chr1 (31-184)||(4242914-4243066)
[»] chr2 (2 HSPs)
chr2 (31-240)||(27106930-27107130)
chr2 (31-107)||(32424598-32424675)
[»] chr6 (3 HSPs)
chr6 (31-140)||(34233387-34233495)
chr6 (31-107)||(28745823-28745900)
chr6 (31-107)||(34235084-34235161)
[»] chr4 (3 HSPs)
chr4 (31-107)||(4746799-4746876)
chr4 (43-150)||(44643072-44643177)
chr4 (31-70)||(895095-895135)
[»] chr3 (1 HSPs)
chr3 (31-70)||(16366789-16366829)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 14837727 - 14837497
Alignment:
Q  1 ttgattgttcggttcatgttgatgatattgtgttgtaattttgagttttattttatttcaaaaattaattagaaataagacttattttacaaaactatta 100  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  14837727 ttgactgttcggttcatgttgatgatattgtattgtaattttgagttttattttatttcaaaagttaattagaaataagaattattttacaaaactatta 14837628  T
Q  101 ttttgacatcatatggttatataattggtcaaagttgcaattgtgggttgatattgttgcttacaattagccgtattagtagttcctcttccaactctta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14837627 ttttgacatcatatggttatataattggtcaaagttgcaattgtgggttgatattgttgcttgcaattagccgtattagtagttcctcttccaactctta 14837528  T
Q  201 cttttcctttgaccatgttttaataacttcc 231  Q
    |||| ||||||||||||||||||||||||||    
T  14837527 ctttccctttgaccatgttttaataacttcc 14837497  T

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Target: scaffold0028 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 109748 - 109948
Alignment:
Q  31 tgttgtaattttgagttttattttatttcaaaaattaattagaaataagacttattttacaaaactattattttgacatcatatggttatataattggtc 130  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |  ||||||||| ||||||||||||||||  || ||| | ||||| || |||    
T  109748 tgttgtaattttgagttttattttatttcaaaagttaattagaaatatgttttattttactaaactattattttgac--cacatgttgatatacttagtc 109845  T
Q  131 aaagttgcaattgtgggttgatattgttgcttacaattagccgtattagtag--ttcctcttccaactcttacttttcctttgaccatgttttaataact 228  Q
    ||||||  || |||||         ||||||| ||||||||||||||||| |  || |||||||||||||||||||  |||||||||||| || ||||||    
T  109846 aaagttataaatgtgg---------gttgcttgcaattagccgtattagttgtttttctcttccaactcttactttcactttgaccatgtgtttataact 109936  T
Q  229 tcctaagtataa 240  Q
    |||||| |||||    
T  109937 tcctaattataa 109948  T

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Target: scaffold0028; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 127330 - 127530
Alignment:
Q  31 tgttgtaattttgagttttattttatttcaaaaattaattagaaataagacttattttacaaaactattattttgacatcatatggttatataattggtc 130  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |  ||||||||| ||||||||||||||||  || ||| | ||||  || |||    
T  127330 tgttgtaattttgagttttattttatttcaaaagttaattagaaatatgttttattttactaaactattattttgac--cacatgttgatattcttagtc 127427  T
Q  131 aaagttgcaattgtgggttgatattgttgcttacaattagccgtattagtag--ttcctcttccaactcttacttttcctttgaccatgttttaataact 228  Q
    ||||||  || |||||         ||||||| ||||||||||||||||| |  || |||||||||||||||||||  |||||||||||| || ||||||    
T  127428 aaagttataaatgtgg---------gttgcttgcaattagccgtattagttgtttttctcttccaactcttactttcactttgaccatgtgtttataact 127518  T
Q  229 tcctaagtataa 240  Q
    |||||| |||||    
T  127519 tcctaattataa 127530  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 31207136 - 31206984
Alignment:
Q  31 tgttgtaatttt-gagttttattttatttcaaaaattaattagaaataagacttattttacaaaactattattttgacatcatatggttatataattggt 129  Q
    |||| ||||||| ||||||||||||||||||||| ||||||||||||| |  ||||||||| |||| |||||||||||  || ||| | ||||| || ||    
T  31207136 tgttataattttagagttttattttatttcaaaagttaattagaaatatgttttattttactaaacaattattttgac--cacatgttgatatacttagt 31207039  T
Q  130 caaagttgcaattgtgggttgatattgttgcttacaattagccgtattagtagtt 184  Q
    |||||||| || ||||||||| ||||| |||||  |||||||| |||| ||||||    
T  31207038 caaagttgtaaatgtgggttggtattggtgcttgaaattagccttatttgtagtt 31206984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 31210527 - 31210375
Alignment:
Q  31 tgttgtaatttt-gagttttattttatttcaaaaattaattagaaataagacttattttacaaaactattattttgacatcatatggttatataattggt 129  Q
    |||| ||||||| ||||||||||||||||||||| ||||||| ||||| |  ||||||||  |||| |||||||||  |||||||| | ||||| || ||    
T  31210527 tgttataattttagagttttattttatttcaaaagttaattaaaaatatgttttattttattaaacaattattttg--atcatatgttgatatacttagt 31210430  T
Q  130 caaagttgcaattgtgggttgatattgttgcttacaattagccgtattagtagtt 184  Q
    |||||||| || ||||||||| ||||| |||||  |||||||| |||| ||||||    
T  31210429 caaagttgtaaatgtgggttggtattggtgcttgaaattagccttatttgtagtt 31210375  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 4243066 - 4242914
Alignment:
Q  31 tgttgtaattttga-gttttattttatttcaaaaattaattagaaataagacttattttacaaaactattattttgacatcatatggttatataattggt 129  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||| |  ||||||||| ||| ||||||||||||  || ||| | ||||| || ||    
T  4243066 tgttgtaattttaaagttttattttatttcaaaagttaattagaaatatgttttattttactaaattattattttgac--cacatgttgatatacttagt 4242969  T
Q  130 caaagttgcaattgtgggttgatattgttgcttacaattagccgtattagtagtt 184  Q
    |||||||| || ||||||||| ||||| |||||  |||||| | |||| ||||||    
T  4242968 caaagttgtaaatgtgggttggtattggtgcttgaaattagtcttatttgtagtt 4242914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 27106930 - 27107130
Alignment:
Q  31 tgttgtaattttgagttttattttatttcaaaaattaattagaaataagacttattttacaaaactattattttgacatcatatggttatataattggtc 130  Q
    |||||||||||||||||||||||||||| |||| ||||||| ||||| |  ||||||||| ||||||||||||||||  || ||| | ||||| || |||    
T  27106930 tgttgtaattttgagttttattttattttaaaagttaattaaaaatatgttttattttactaaactattattttgac--cacatgttgatatacttagtc 27107027  T
Q  131 aaagttgcaattgtgggttgatattgttgcttacaattagccgtattagtag--ttcctcttccaactcttacttttcctttgaccatgttttaataact 228  Q
    ||||||  || |||||         ||||||| ||||||||| ||||||| |  || || |||||||| |||||||   ||||||||||| || ||||||    
T  27107028 aaagttataaatgtgg---------gttgcttgcaattagccatattagttgtttttctattccaacttttactttcattttgaccatgtgtttataact 27107118  T
Q  229 tcctaagtataa 240  Q
    |||||| |||||    
T  27107119 tcctaattataa 27107130  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 32424598 - 32424675
Alignment:
Q  31 tgttgtaatttt-gagttttattttatttcaaaaattaattagaaataagacttattttacaaaactattattttgac 107  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||||| |  ||||||||| ||||||||||||||||    
T  32424598 tgttgtaattttagagttttattttattttaaaagttaattagaaatatgttttattttactaaactattattttgac 32424675  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 34233387 - 34233495
Alignment:
Q  31 tgttgtaattttga-gttttattttatttcaaaaattaattagaaataagacttattttacaaaactattattttgacatcatatggttatataattggt 129  Q
    |||||||||||| | ||||||||||||||||||| ||||||| |||||||  |||||||||  |||||||||||||||  || ||| | |||||||| ||    
T  34233387 tgttgtaattttaaagttttattttatttcaaaagttaattaaaaataagctttattttacttaactattattttgac--cacatgataatataattagt 34233484  T
Q  130 caaagttgcaa 140  Q
    |||| ||||||    
T  34233485 caaaattgcaa 34233495  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 28745823 - 28745900
Alignment:
Q  31 tgttgtaattttga-gttttattttatttcaaaaattaattagaaataagacttattttacaaaactattattttgac 107  Q
    |||||||||||| | ||| ||||||||||||||| ||||||  ||||||| ||||||||||   |||||| |||||||    
T  28745823 tgttgtaattttaaagttgtattttatttcaaaagttaattgcaaataagccttattttactccactattgttttgac 28745900  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 34235084 - 34235161
Alignment:
Q  31 tgttgtaattttga-gttttattttatttcaaaaattaattagaaataagacttattttacaaaactattattttgac 107  Q
    |||||||||||| | ||||||| |||||||| || ||||||| |||||||  ||||||||   |||||||||||||||    
T  34235084 tgttgtaattttaaagttttatattatttcagaagttaattaaaaataagctttattttatttaactattattttgac 34235161  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 4746799 - 4746876
Alignment:
Q  31 tgttgtaatttt-gagttttattttatttcaaaaattaattagaaataagacttattttacaaaactattattttgac 107  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| | || | | ||||| ||||||||||||||||    
T  4746799 tgttgtaattttagagttttattttatttcaaaagttaattagaaacatgattaactttactaaactattattttgac 4746876  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 44643072 - 44643177
Alignment:
Q  43 gagttttattttatttcaaaaattaattagaaataagacttattttacaaaactattattttgacatcatatggttatataattggtcaaagttgcaatt 142  Q
    ||||||||||||||||||||| ||||||| ||||| |  ||||||||| ||||||||||||| ||  || ||| | ||||| || |||||||||| || |    
T  44643072 gagttttattttatttcaaaagttaattaaaaatatgttttattttactaaactattattttaac--cacatgttgatatacttagtcaaagttgtaaat 44643169  T
Q  143 gtgggttg 150  Q
    ||||||||    
T  44643170 gtgggttg 44643177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 895095 - 895135
Alignment:
Q  31 tgttgtaatttt-gagttttattttatttcaaaaattaatt 70  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  895095 tgttgtaattttagagttttattttatttcaaaagttaatt 895135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 16366829 - 16366789
Alignment:
Q  31 tgttgtaatttt-gagttttattttatttcaaaaattaatt 70  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  16366829 tgttgtaattttagagttttattttatttcaaaagttaatt 16366789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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