View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8932_low_22 (Length: 249)
Name: NF8932_low_22
Description: NF8932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8932_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 30942827 - 30943053
Alignment:
| Q |
1 |
aacttgtaaccattacttatttacttatatgtataacttatattctattttcagttcagtttacaaatggaacaagggattccactccaaccaaatttgc |
100 |
Q |
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| T |
30942827 |
aacttgtaaccattacttatttacttatatgtataacttatattctattttcagttcagtttacaaatggaacaagggattccactccaaccaaatttgc |
30942926 |
T |
|
| Q |
101 |
taaccttcaatagatttaaattttttgcttcaaaaggagtcaaacttggaccaaccgttttatcttcctggtgagttcttaaaggattttatcattggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
30942927 |
taaccttcaatagatttaaattttttgcttcaaaaggagtcaaacttggaccaaccgttttatcttcctggtgagttcttcaaggattttatcattgtag |
30943026 |
T |
|
| Q |
201 |
ttatgaaatctacaaaccggaccggac |
227 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
30943027 |
ttatgaaatctacaaaccggatcggac |
30943053 |
T |
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