View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8932_low_24 (Length: 218)

Name: NF8932_low_24
Description: NF8932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8932_low_24
NF8932_low_24
[»] chr7 (15 HSPs)
chr7 (18-208)||(19927905-19928095)
chr7 (22-185)||(40819605-40819768)
chr7 (23-208)||(26279596-26279781)
chr7 (21-185)||(25443837-25444001)
chr7 (21-185)||(30947799-30947962)
chr7 (21-122)||(22293078-22293179)
chr7 (21-87)||(22205104-22205170)
chr7 (21-87)||(22229569-22229635)
chr7 (21-122)||(45280987-45281088)
chr7 (80-120)||(36630746-36630786)
chr7 (123-174)||(22205008-22205059)
chr7 (123-174)||(22229680-22229731)
chr7 (124-174)||(22293205-22293255)
chr7 (124-174)||(26244667-26244717)
chr7 (21-55)||(37243003-37243037)
[»] chr8 (11 HSPs)
chr8 (21-185)||(17068414-17068578)
chr8 (21-185)||(17579695-17579859)
chr8 (21-185)||(29054800-29054966)
chr8 (21-185)||(17630837-17631001)
chr8 (21-208)||(21076209-21076396)
chr8 (21-185)||(34964423-34964587)
chr8 (21-208)||(20289579-20289766)
chr8 (21-95)||(10861549-10861623)
chr8 (110-185)||(10861482-10861557)
chr8 (21-119)||(3046537-3046635)
chr8 (124-184)||(3046447-3046507)
[»] chr3 (14 HSPs)
chr3 (21-185)||(39580132-39580296)
chr3 (21-184)||(959074-959237)
chr3 (21-208)||(25041578-25041765)
chr3 (21-185)||(4533709-4533873)
chr3 (21-185)||(42864509-42864669)
chr3 (21-128)||(53330421-53330528)
chr3 (21-128)||(53334105-53334212)
chr3 (21-128)||(53337782-53337889)
chr3 (76-184)||(21869148-21869256)
chr3 (21-134)||(39674418-39674529)
chr3 (21-122)||(22976519-22976620)
chr3 (123-184)||(22976432-22976493)
chr3 (89-122)||(29360014-29360047)
chr3 (123-178)||(29360074-29360129)
[»] chr6 (2 HSPs)
chr6 (21-184)||(21112327-21112490)
chr6 (21-185)||(8862269-8862433)
[»] chr4 (2 HSPs)
chr4 (23-185)||(54260366-54260528)
chr4 (22-72)||(26261273-26261323)
[»] chr5 (9 HSPs)
chr5 (21-185)||(8871483-8871647)
chr5 (21-185)||(13854368-13854531)
chr5 (21-87)||(36606414-36606480)
chr5 (21-119)||(6665911-6666009)
chr5 (21-122)||(32659123-32659224)
chr5 (118-185)||(36606474-36606541)
chr5 (123-179)||(6666038-6666094)
chr5 (81-122)||(30131211-30131252)
chr5 (139-185)||(32659267-32659313)
[»] scaffold0017 (1 HSPs)
scaffold0017 (21-185)||(37725-37889)
[»] chr2 (5 HSPs)
chr2 (23-185)||(14811517-14811679)
chr2 (21-185)||(14314062-14314232)
chr2 (78-122)||(13043622-13043666)
chr2 (21-79)||(29081155-29081213)
chr2 (124-184)||(13043503-13043563)
[»] chr1 (4 HSPs)
chr1 (21-182)||(46397774-46397933)
chr1 (21-122)||(33369016-33369114)
chr1 (81-120)||(22150428-22150467)
chr1 (130-184)||(33369145-33369199)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 19928095 - 19927905
Alignment:
Q  18 tatggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19928095 tatggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttc 19927996  T
Q  118 ttctgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttcnnnnnnnatagtacttatgatgt 208  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  19927995 ttctgctgtttgttttcgatataaattagtgataactgttaagtagtcaacattagataaagatgttctttttttatagtacttatgatgt 19927905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 40819768 - 40819605
Alignment:
Q  22 gtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttct 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  40819768 gtttctcgtcaccacatagcaatagctattctctcttctaaccattaccacttattgaattctactctgtttctcttctctctaatgttatgtttcttct 40819669  T
Q  122 gctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40819668 gctgtttgttttcgatataaattagtgataacagttaagtagtcaacattagataaagatgttc 40819605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 26279781 - 26279596
Alignment:
Q  23 tttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttctg 122  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26279781 tttctcgtcaccacataacaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctg 26279682  T
Q  123 ctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttcnnnnnnnatagtacttatgatgt 208  Q
    |||||||||||| |||||||||| || |||||||||||||||||||||| || ||||||||||       ||||||||||||||||    
T  26279681 ctgtttgttttcgatataaattaatgttaactgttaagtagtcaacattggacaaagatgttctttttttatagtacttatgatgt 26279596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 25443837 - 25444001
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  25443837 ggtttctcatcaccacatatcaatagctattctcttttctaaccattaccacagattgaattctactctgtttctcttctctctaatgttatgtttcttc 25443936  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  25443937 tgctatttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 25444001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 30947799 - 30947962
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  |||||||||||||||    
T  30947799 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccaccgattgaattctactatgtttctcttctctc-gatgttatgtttcttc 30947897  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    ||| |||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||    
T  30947898 tgccgtttgttttcgatataaattagtgttaactgttaaatagtcaacattagacaaagatgttc 30947962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 22293078 - 22293179
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||| ||| | |||| ||||| ||||||||||||||||||| |||  ||||||||| |||||||||||||||||||  |||||||| ||    
T  22293078 ggtttctcgtcaccatataacgatagttattccctcttctaaccattaccaccgatcaaattctactatgtttctcttctctctaatactatgtttcctc 22293177  T
Q  121 tg 122  Q
    ||    
T  22293178 tg 22293179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 22205170 - 22205104
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctact 87  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||||||||| | ||||||||||||||    
T  22205170 ggtttctcgtcaccaaatagcgatagctattccctcttctaaccattaccgccgattgaattctact 22205104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 22229569 - 22229635
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctact 87  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||||||||| | ||||||||||||||    
T  22229569 ggtttctcgtcaccaaatagcgatagctattccctcttctaaccattaccgccgattgaattctact 22229635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 45280987 - 45281088
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||| |||||||| ||| |||| ||||| |||||||||||| || |||  |||| |||||||| ||||||||||  ||||||||| ||||||||||    
T  45280987 ggtttctcatcaccacacagcgatagttattccctcttctaaccaatatcaccaattgtattctactatgtttctctttgctctaatgtcatgtttcttc 45281086  T
Q  121 tg 122  Q
    ||    
T  45281087 tg 45281088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 36630746 - 36630786
Alignment:
Q  80 attctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  36630746 attctactatgtttctcttctttctaatgttatgtttcttc 36630786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 22205059 - 22205008
Alignment:
Q  123 ctgtttgttttcaatataaattagtgataactgttaagtagtcaacattaga 174  Q
    |||||| ||||| ||||||||||||| ||||| ||| |||||||||||||||    
T  22205059 ctgtttcttttcgatataaattagtgttaactattaggtagtcaacattaga 22205008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 22229680 - 22229731
Alignment:
Q  123 ctgtttgttttcaatataaattagtgataactgttaagtagtcaacattaga 174  Q
    |||||| ||||| ||||||||||||| ||||| ||| |||||||||||||||    
T  22229680 ctgtttcttttcgatataaattagtgttaactattaggtagtcaacattaga 22229731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 22293205 - 22293255
Alignment:
Q  124 tgtttgttttcaatataaattagtgataactgttaagtagtcaacattaga 174  Q
    ||||||||||  || |||||||||| ||||| |||||||||||||||||||    
T  22293205 tgtttgtttttgatctaaattagtgttaactattaagtagtcaacattaga 22293255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 26244717 - 26244667
Alignment:
Q  124 tgtttgttttcaatataaattagtgataactgttaagtagtcaacattaga 174  Q
    |||||||||||||| | |||||||| ||| | |||||||||||||||||||    
T  26244717 tgtttgttttcaatctcaattagtgttaattattaagtagtcaacattaga 26244667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 37243037 - 37243003
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctct 55  Q
    ||||||||||||||||||||||||| |||||||||    
T  37243037 ggtttctcgtcaccacatagcaataactattctct 37243003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 17068414 - 17068578
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  17068414 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattttactctgtttctcttctctctaatgttatgtttcttc 17068513  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  17068514 tgctgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 17068578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 17579859 - 17579695
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  17579859 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattttactctgtttctcttctctctaatgttatgtttcttc 17579760  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  17579759 tgctgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 17579695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 29054800 - 29054966
Alignment:
Q  21 ggtttctcgtcaccacatagcaa--tagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttct 118  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29054800 ggtttctcgtcaccacatagcaaaatagctattctctcttctaaccattaccactgattgaattctactatgtttctcttctctctaatgttatgtttct 29054899  T
Q  119 tctgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  29054900 tctgctgtttgttttcgatataaattagtgttaacggttaagtagtcaacattagacaaagatgttc 29054966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 17631001 - 17630837
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  17631001 ggtttctcgtcaccaaatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttattc 17630902  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||||    
T  17630901 tgctgttagttttcgatataaattagtgttaactgttaagtagtcaacattagacaaatatgttc 17630837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 21076209 - 21076396
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  21076209 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttctta 21076308  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttcnnnnnnnatagtacttatgatgt 208  Q
    || ||||||||||| ||||||||||||| |||| |||||||| | ||||||||| ||||||||||       ||||||||||||||||    
T  21076309 tgttgtttgttttcgatataaattagtgttaaccgttaagtaattaacattagacaaagatgttctttttttatagtacttatgatgt 21076396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 34964587 - 34964423
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||| |||    
T  34964587 ggtttctcgtcaccgcatagcaatagctattctctcttctaaccattacctttgattgaattctactatgtttctcttctctctaatgttatgtttattc 34964488  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  34964487 tgctgtttgttttcgatgtaaattagtgttaactgttaagtagtcaacattagacaaagatgttc 34964423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 20289579 - 20289766
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||     
T  20289579 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaacactaattgaattctactctgtttctcttctctctaatgttatgtttctta 20289678  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttcnnnnnnnatagtacttatgatgt 208  Q
    || ||||||||||| ||||||||||||| |||| |||||||| | ||||||||| ||||||||||       ||||||||||||||||    
T  20289679 tgttgtttgttttcgatataaattagtgttaaccgttaagtaattaacattagacaaagatgttctttttttatagtacttatgatgt 20289766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 10861623 - 10861549
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttct 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10861623 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactatgtttct 10861549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 10861557 - 10861482
Alignment:
Q  110 tatgtttcttctgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  10861557 tatgtttcttctgctgtttgttttcgatataaattagtgttaactattaagtagtcaacattagacaaagatgttc 10861482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 3046635 - 3046537
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttctt 119  Q
    ||||||||||||||||||| | ||| |||||| |||||||||||||||||||  ||||||||||||| ||||||||||  ||||||||  |||||||||    
T  3046635 ggtttctcgtcaccacataacgataactattccctcttctaaccattaccaccaattgaattctactatgtttctctttgctctaatgccatgtttctt 3046537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 3046507 - 3046447
Alignment:
Q  124 tgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgtt 184  Q
    ||||||||||  ||||||||||||| ||| | ||||||||||||||||||| |||| ||||    
T  3046507 tgtttgtttttgatataaattagtgttaaatattaagtagtcaacattagacaaaggtgtt 3046447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 39580132 - 39580296
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39580132 ggtttctcgtcaccacatagcaatagctattctctctaccaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 39580231  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  39580232 tgctgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 39580296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 959074 - 959237
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  959074 ggtttctcgtcaccacatagaaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttc 959173  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgtt 184  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||    
T  959174 tgctgtttgttttcgatataaattagtgataaccgttaagtagtcaacattagacaaagatgtt 959237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 25041578 - 25041765
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  25041578 ggtttctcgtcaccacatagcaatagctattctcttttttaaccattaccactgattaaattctactctgtttctcttctctctaatgttatgtttcttc 25041677  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttcnnnnnnnatagtacttatgatgt 208  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||       ||||||||||||||||    
T  25041678 tgctgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaagatgttctttttttatagtacttatgatgt 25041765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 4533709 - 4533873
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||     
T  4533709 ggtttctcgtcaccacataacaatagctattctctcttctaaccattaccacttattgaattctactctgtttctcttctctctaatgttatgtttcttt 4533808  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||||||||||||| |||||||||| || |||||||||| |||||||||||||| ||||||||||    
T  4533809 tgctgtttgttttcgatataaattattgttaactgttaattagtcaacattagacaaagatgttc 4533873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 42864509 - 42864669
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  42864509 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactaattgaattctactatgtttctcttctctctaatgttatgtttcttc 42864608  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||||||||||||| |||||||||| |||    ||||||||||||| ||||||| ||||||||||    
T  42864609 tgctgtttgttttcgatataaattactga----tgttaagtagtcaccattagacaaagatgttc 42864669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 53330528 - 53330421
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53330528 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattatcactgattgaattctactctgtttctcttctctctaatgttatgtttcttc 53330429  T
Q  121 tgctgttt 128  Q
    ||||||||    
T  53330428 tgctgttt 53330421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 53334212 - 53334105
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53334212 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattatcactgattgaattctactctgtttctcttctctctaatgttatgtttcttc 53334113  T
Q  121 tgctgttt 128  Q
    ||||||||    
T  53334112 tgctgttt 53334105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 53337889 - 53337782
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53337889 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattatcactgattgaattctactctgtttctcttctctctaatgttatgtttcttc 53337790  T
Q  121 tgctgttt 128  Q
    ||||||||    
T  53337789 tgctgttt 53337782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 21869148 - 21869256
Alignment:
Q  76 ttgaattctactttgtttctcttctctctaatgttatgtttcttctgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagat 175  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  21869148 ttgaattctactatgtttctcttctctctaatgttatgtttcttctgctgtttgttttcaatataaattagtgttaactgttaagtagtcaacattagac 21869247  T
Q  176 aaagatgtt 184  Q
    |||||||||    
T  21869248 aaagatgtt 21869256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 39674418 - 39674529
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  39674418 ggtttctcgtcaccacatagcaatagctattctctcttcta--cattaccactgattgaattctactccgtttctcttctctctaatgttatgtttcttc 39674515  T
Q  121 tgctgtttgttttc 134  Q
    ||||||||||||||    
T  39674516 tgctgtttgttttc 39674529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 22976620 - 22976519
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||  ||||||||||    
T  22976620 ggtttctcgtcaccacatagcgatagctatttcctcttctaaccattaccaccgattgaattctactatgtttcttttctctctaatgccatgtttcttc 22976521  T
Q  121 tg 122  Q
    ||    
T  22976520 tg 22976519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 22976493 - 22976432
Alignment:
Q  123 ctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgtt 184  Q
    |||||| ||||| ||||||||||||| ||||| ||||||||||||||||||| |||| ||||    
T  22976493 ctgtttattttcgatataaattagtgttaactattaagtagtcaacattagacaaaggtgtt 22976432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 29360014 - 29360047
Alignment:
Q  89 tgtttctcttctctctaatgttatgtttcttctg 122  Q
    ||||||||||||||||||||||||||||||||||    
T  29360014 tgtttctcttctctctaatgttatgtttcttctg 29360047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 29360074 - 29360129
Alignment:
Q  123 ctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaa 178  Q
    |||||||||||| || |||||||||| ||||| | ||| |||||||||||||||||    
T  29360074 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagataaa 29360129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 21112327 - 21112490
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21112327 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttc 21112426  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgtt 184  Q
    |||||||||||||  ||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  21112427 tgctgtttgtttttgatataaattagtgttaactgttaagtagtcaacattagacaaagatgtt 21112490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 8862269 - 8862433
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  8862269 ggtttctcgtcaccgcatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctataatgttatgtttcttc 8862368  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    | |||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  8862369 tactgtttgttttcgatataaattagtgataactgttaagtggtcaacattagacaaagatgttc 8862433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 54260366 - 54260528
Alignment:
Q  23 tttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttctg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54260366 tttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctg 54260465  T
Q  123 ctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  54260466 ctgtttgttttcgatataaattagtgttaactattaagtagtcaacattagacaaagatgttc 54260528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 26261273 - 26261323
Alignment:
Q  22 gtttctcgtcaccacatagcaatagctattctctcttctaaccattaccac 72  Q
    |||||||||||||||  ||| |||||||||| |||||||||||||||||||    
T  26261273 gtttctcgtcaccaccgagctatagctattccctcttctaaccattaccac 26261323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 8871483 - 8871647
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  8871483 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactaattgaattctactatgtttctcttctctctaatgttatgtttcttc 8871582  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||||    
T  8871583 tgctgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaaaatgttc 8871647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 13854531 - 13854368
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13854531 ggtttctcgtcaccacatagcaataactattatctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttc 13854432  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||| |||| |||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  13854431 tgctatttg-tttcgatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 13854368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 36606414 - 36606480
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctact 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36606414 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattatcactgattgaattctact 36606480  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 6665911 - 6666009
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttctt 119  Q
    ||||||||||||||||||||| ||| |||||| |||||||||||||||||||  ||||||||||||| ||||||||||  ||||||||  |||||||||    
T  6665911 ggtttctcgtcaccacatagcgataactattccctcttctaaccattaccaccaattgaattctactatgtttctctttgctctaatgccatgtttctt 6666009  T

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Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 32659123 - 32659224
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||||||||| ||||||||||  ||||||| |||||||   |||||||||||||||  ||||||| || ||||||||||||||||||||    
T  32659123 ggtttctcgtcaccacatagcgatagctattccatcttctacccattacttatgattgaattctactaagtttctcctccctctaatgttatgtttcttc 32659222  T
Q  121 tg 122  Q
    ||    
T  32659223 tg 32659224  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 36606474 - 36606541
Alignment:
Q  118 ttctgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||| ||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  36606474 ttctactgtttgtttttaatataaattagtattaactgttaagtagtcaacattagacaaagatgttc 36606541  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 6666038 - 6666094
Alignment:
Q  123 ctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaag 179  Q
    |||||||||||| ||||||||||||| |||||  |||||||||||||||||| ||||    
T  6666038 ctgtttgttttcgatataaattagtgttaactagtaagtagtcaacattagacaaag 6666094  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 30131252 - 30131211
Alignment:
Q  81 ttctactttgtttctcttctctctaatgttatgtttcttctg 122  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  30131252 ttctactttatttctcttctctctaatgctatgtttcttctg 30131211  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 32659267 - 32659313
Alignment:
Q  139 taaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||||||||| ||||| ||||||||||||||||||| |||| |||||    
T  32659267 taaattagtgttaactattaagtagtcaacattagacaaaggtgttc 32659313  T

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Target: scaffold0017 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 37889 - 37725
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37889 ggtttctcgtcaccacatagcaatagctattttctcttctaaccattaccgctgattgaattctactctgtttctcttctctctaatgttatgtttcttc 37790  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  37789 tgctgtttgttttcgatataaatttgtgttaactgttaagtagtcaacattagacaaagatgttc 37725  T

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Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 14811517 - 14811679
Alignment:
Q  23 tttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttctg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||     
T  14811517 tttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctatttctcttctctctaatgttatgtttcttcta 14811616  T
Q  123 ctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
     ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  14811617 ttgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 14811679  T

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Target: chr2; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 14314232 - 14314062
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagc-------tattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatg 113  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  14314232 ggtttctcgtcaccacatagcaatagccaatagttattctctcttctaaccattaccggtgattgaattctactttgtttctcttctctctaatgttatg 14314133  T
Q  114 tttcttctgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgttc 185  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||||    
T  14314132 tttctt-tgctgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaaaatgttc 14314062  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 13043666 - 13043622
Alignment:
Q  78 gaattctactttgtttctcttctctctaatgttatgtttcttctg 122  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  13043666 gaattctactatgtttctcttctctctaatgttatgtttcttctg 13043622  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 29081155 - 29081213
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattga 79  Q
    |||| |||||||||||  |||||||| ||||| ||||||||||||||||||| ||||||    
T  29081155 ggttcctcgtcaccaccgagcaatagttattccctcttctaaccattaccaccgattga 29081213  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 13043563 - 13043503
Alignment:
Q  124 tgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgtt 184  Q
    |||||||||||||| | |||||||| ||| | |||||| |||||||||||| || ||||||    
T  13043563 tgtttgttttcaatctcaattagtgttaagtattaagtggtcaacattagacaatgatgtt 13043503  T

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Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 46397933 - 46397774
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||||||| ||| || |||||||||||| || ||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||    
T  46397933 ggtttctcgtcaccacatatcaacagttattctctcttccaatcattaccaccgattgaattctact--gtttctcttctctctaatgttatgtttcttc 46397836  T
Q  121 tgctgtttgttttcaatataaattagtgataactgttaagtagtcaacattagataaagatg 182  Q
    || ||||||||||| |||||||||| || ||||| ||||||| ||||||||||| |||||||    
T  46397835 tgttgtttgttttcgatataaattattgttaactattaagtaatcaacattagacaaagatg 46397774  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 33369016 - 33369114
Alignment:
Q  21 ggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||   ||||||||||| |||||||||||    
T  33369016 ggtttctcgtcaccacatagcgatagctattccctcttctaaccattaccactgattgaattctactctgtttc---tctctctaatgctatgtttcttc 33369112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 22150467 - 22150428
Alignment:
Q  81 ttctactttgtttctcttctctctaatgttatgtttcttc 120  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  22150467 ttctactttgtttctcttatctctaatgctatgtttcttc 22150428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 33369145 - 33369199
Alignment:
Q  130 ttttcaatataaattagtgataactgttaagtagtcaacattagataaagatgtt 184  Q
    |||||||| |||| ||||| ||||| ||||||||||||||||||| |||| ||||    
T  33369145 ttttcaatctaaaatagtgttaactattaagtagtcaacattagacaaaggtgtt 33369199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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